Bo2g138840 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo2g138840 T247978_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.924 0.649
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.919 0.662
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.918 0.649
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.918 0.649
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.917 0.635
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.917 0.635
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.917 0.635
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.911 0.662
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.911 0.649
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.910 0.500
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.910 0.500
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.910 0.500
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.905 0.649
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.893 0.473
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.887 0.446
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.839 0.419
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g138840.1 MADF 85 162

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra036354 Brassica rapa Bra036354 I 0.970
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.927
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.925
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.924
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.920
Cla023054 Citrullus lanatus Cla023054 I 0.920
29929.m004704 Ricinus communis 29929.m004704 D 0.919
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.919
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.918
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.918
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.918
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.918
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.918
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.918
GT-4 Arabidopsis thaliana AT3G25990 D 0.917
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.915
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.915
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.915
Ca_11315 Cicer arietinum Ca_11315 I 0.911
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.911
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.911
MDP0000164819 Malus domestica MDP0000164819 D 0.911
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.911
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.911
Pm006885 Prunus mume Pm006885 I 0.911
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.911
GT-1 Arabidopsis thaliana AT1G13450 D 0.910
Bo5g017510 Brassica oleracea Bo5g017510 I 0.909
Bra019721 Brassica rapa Bra019721 I 0.909
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.905
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.900
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.900
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.900
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.900
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.900
Si010147m.g Setaria italica Si010147m.g I 0.897
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.896
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.896
PK20543.1 Cannabis sativa PK20543.1 D 0.893
Bra026903 Brassica rapa Bra026903 I 0.893
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.893
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.893
Bo8g107400 Brassica oleracea Bo8g107400 I 0.893
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.893
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.893
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.892
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.891
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.891
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.891
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.891
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.890
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.887
OS04G0486400 Oryza sativa OS04G0486400 D 0.887
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.887
Si036121m.g Setaria italica Si036121m.g I 0.885
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.884
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.884
TCM_010751 Theobroma cacao TCM_010751 I 0.882
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.882
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.882
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.882
OB04G23970 Oryza brachyantha OB04G23970 I 0.872
mgf016368m Mimulus guttatus mgf016368m I 0.872
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.868
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.839
Pm016214 Prunus mume Pm016214 I 0.838
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.838
MDP0000275412 Malus domestica MDP0000275412 I 0.832