Bo5g137800 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo5g137800 T247988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.960 0.920
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.960 0.920
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.960 0.920
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.942 0.787
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g137800.1 MADF 159 241

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra029812 Brassica rapa Bra029812 I 0.971
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.960
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.960
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.960
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.959
Cla018015 Citrullus lanatus Cla018015 I 0.956
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.956
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.955
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.955
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.955
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.955
TCM_022397 Theobroma cacao TCM_022397 I 0.954
29815.m000504 Ricinus communis 29815.m000504 I 0.948
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.947
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.947
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.946
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.945
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.944
Pm026265 Prunus mume Pm026265 I 0.942
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.942
PK04914.1 Cannabis sativa PK04914.1 D 0.942
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.940
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.940
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.939
Ca_20148 Cicer arietinum Ca_20148 I 0.939
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.937
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.932
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.920
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.919
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.918
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.915
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.910
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.910
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.908
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.906
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.901
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.901
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.901
mgf008067m Mimulus guttatus mgf008067m I 0.901
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.901
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.901
MDP0000399495 Malus domestica MDP0000399495 I 0.899
MDP0000415733 Malus domestica MDP0000415733 I 0.899
MDP0000201016 Malus domestica MDP0000201016 I 0.899
OB04G18670 Oryza brachyantha OB04G18670 I 0.899
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.897
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.891
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.883
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.881
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.881
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.881
F775_31501 Aegilops tauschii F775_31501 I 0.881
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.881
28077.m000081 Ricinus communis 28077.m000081 I 0.876
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.875
TCM_043551 Theobroma cacao TCM_043551 I 0.875
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.873
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.872
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.871
Si009787m.g Setaria italica Si009787m.g I 0.870
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.865
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.860
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.859
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.859
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.849
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.840
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.840
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.813