Bo5g137800 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo5g137800 T247988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.960 0.920
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.960 0.920
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.960 0.920
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.942 0.787
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g137800.1 MADF 159 241

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_31501 Aegilops tauschii F775_31501 I 0.881
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.849
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.932
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.901
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.960
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.960
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.960
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.881
Bra029812 Brassica rapa Bra029812 I 0.971
PK04914.1 Cannabis sativa PK04914.1 D 0.942
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.955
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.955
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.910
Ca_20148 Cicer arietinum Ca_20148 I 0.939
Cla018015 Citrullus lanatus Cla018015 I 0.956
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.959
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.956
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.940
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.955
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.910
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.906
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.947
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.813
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.947
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.945
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.891
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.897
MDP0000415733 Malus domestica MDP0000415733 I 0.899
MDP0000399495 Malus domestica MDP0000399495 I 0.899
MDP0000201016 Malus domestica MDP0000201016 I 0.899
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.955
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.939
mgf008067m Mimulus guttatus mgf008067m I 0.901
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.937
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.915
OB04G18670 Oryza brachyantha OB04G18670 I 0.899
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.883
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.901
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.901
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.901
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.901
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.875
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.872
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.865
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.860
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.918
Pm026265 Prunus mume Pm026265 I 0.942
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.908
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.942
28077.m000081 Ricinus communis 28077.m000081 I 0.876
29815.m000504 Ricinus communis 29815.m000504 I 0.948
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.920
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.859
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.859
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.840
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.840
Si009787m.g Setaria italica Si009787m.g I 0.870
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.940
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.946
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.871
TCM_022397 Theobroma cacao TCM_022397 I 0.954
TCM_043551 Theobroma cacao TCM_043551 I 0.875
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.881
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.881
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.881
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.944
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.919
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.873