Bo6g083670 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo6g083670 T247994_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN

NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.925 0.757
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.879 0.657
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.879 0.657
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g083670.1 MADF 215 287

Links

Other MADF family TFs
Other Brassica oleracea TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29739.m003611 Ricinus communis 29739.m003611 I 0.867
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.911
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.948
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.879
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.930
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.851
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.888
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.891
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.941
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.815
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.953
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.870
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.821
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.821
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.891
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.879
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.839
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.891
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.855
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.932
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.879
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.937
MDP0000122269 Malus domestica MDP0000122269 I 0.953
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.952
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.934
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.822
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.923
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.936
OB02G10400 Oryza brachyantha OB02G10400 I 0.891
OBART02G00380 Oryza barthii OBART02G00380 I 0.879
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.879
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.879
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.879
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.879
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.947
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.891
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.879
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.943
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.879
OS02G0104500 Oryza sativa OS02G0104500 D 0.879
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.891
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.891
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.942
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.947
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.918
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.935
PK14727.1 Cannabis sativa PK14727.1 I 0.953
PK15172.1 Cannabis sativa PK15172.1 D 0.925
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.867
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.877
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.876
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.877
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.877
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.915
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.867
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.891
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.824
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.824
Si033157m.g Setaria italica Si033157m.g I 0.859
TCM_037381 Theobroma cacao TCM_037381 I 0.821
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.952
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.953
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.923
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.851
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.934
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.851
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.902