Bo8g107400 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo8g107400 T248005_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.950 0.757
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.946 0.786
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.946 0.771
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.945 0.757
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.945 0.757
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.945 0.757
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.939 0.614
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.939 0.614
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.930 0.671
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.924 0.486
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.920 0.771
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.917 0.743
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.915 0.714
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.915 0.629
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.915 0.629
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.915 0.629
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g107400.1 MADF 86 167

Links

Other MADF family TFs
Other Brassica oleracea TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra026903 Brassica rapa Bra026903 I 0.956
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.952
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.951
TCM_010751 Theobroma cacao TCM_010751 I 0.951
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.951
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.951
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.950
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.948
GT-1 Arabidopsis thaliana AT1G13450 D 0.947
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.946
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.946
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.946
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.946
MDP0000164819 Malus domestica MDP0000164819 D 0.946
Pm006885 Prunus mume Pm006885 I 0.946
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.945
Bra019721 Brassica rapa Bra019721 I 0.942
Bo5g017510 Brassica oleracea Bo5g017510 I 0.942
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.939
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.939
Ca_11315 Cicer arietinum Ca_11315 I 0.939
Cla023054 Citrullus lanatus Cla023054 I 0.939
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.939
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.939
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.939
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.939
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.939
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.939
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.939
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.937
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.936
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.934
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.934
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.933
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.933
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.932
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.931
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.931
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.930
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.930
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.929
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.925
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.924
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.924
PK20543.1 Cannabis sativa PK20543.1 D 0.920
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.920
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.920
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.917
OS04G0486400 Oryza sativa OS04G0486400 D 0.917
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.917
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.917
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.917
29929.m004704 Ricinus communis 29929.m004704 D 0.915
Si036121m.g Setaria italica Si036121m.g I 0.915
GT-4 Arabidopsis thaliana AT3G25990 D 0.915
Si010147m.g Setaria italica Si010147m.g I 0.908
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.908
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.907
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.904
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.902
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.902
mgf016368m Mimulus guttatus mgf016368m I 0.900
Bra036354 Brassica rapa Bra036354 I 0.893
Bo2g138840 Brassica oleracea Bo2g138840 I 0.893
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.890
Pm016214 Prunus mume Pm016214 I 0.890
MDP0000275412 Malus domestica MDP0000275412 I 0.885
OB04G23970 Oryza brachyantha OB04G23970 I 0.878