Bra003346 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra003346 T248009_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.965 0.859
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.965 0.859
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003346.1-P MADF 37 124

Links

Other MADF family TFs
Other Brassica rapa TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.847
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.964
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.965
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.967
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.851
Bo6g075950 Brassica oleracea Bo6g075950 I 0.971
Bra007407 Brassica rapa Bra007407 I 0.952
PK27986.1 Cannabis sativa PK27986.1 I 0.924
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.925
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.925
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.899
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.917
Ca_19877 Cicer arietinum Ca_19877 I 0.882
Ca_00394 Cicer arietinum Ca_00394 I 0.903
Cla002288 Citrullus lanatus Cla002288 I 0.829
Cla009854 Citrullus lanatus Cla009854 I 0.877
Cla019967 Citrullus lanatus Cla019967 I 0.841
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.876
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.876
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.841
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.841
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.970
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.937
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.903
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.889
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.903
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.844
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.902
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.840
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.840
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.877
MDP0000301451 Malus domestica MDP0000301451 I 0.936
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.868
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.868
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.923
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.878
mgf006505m Mimulus guttatus mgf006505m I 0.832
mgf000047m Mimulus guttatus mgf000047m I 0.825
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.896
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.888
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.891
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.902
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.874
OBART05G25610 Oryza barthii OBART05G25610 I 0.854
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.854
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.854
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.854
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.854
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.854
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.854
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.839
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.854
OS05G0560600 Oryza sativa OS05G0560600 I 0.854
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.839
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.839
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.897
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.853
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.882
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.912
29900.m001628 Ricinus communis 29900.m001628 I 0.868
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.901
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.884
Si022565m.g Setaria italica Si022565m.g I 0.839
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.835
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.940
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.915
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.835
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.839
TCM_029695 Theobroma cacao TCM_029695 I 0.902
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.905
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.877
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.839