CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra022149
(
Brassica rapa
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
Bra022149
T248027_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G47660
M02266_2.00
Arabidopsis thaliana
RCGGTAAW
WTTACCGY
PBM
Weirauch et al.(2014)
pTH7911
0.893
0.530
AT5G47660
M06980_2.00
Arabidopsis thaliana
RCRGTWAAAAHDDHW
WDHHDTTTTWACYGY
Dap-seq
OMalley et al.(2016)
AT5G47660_col_a
0.893
0.530
AT5G47660
M06981_2.00
Arabidopsis thaliana
WHHHHRCRGTWAAWW
WWTTWACYGYDDDDW
Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a
0.893
0.530
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra022149.1-P
MADF
303
371
EEKTGVVHKGAIWDEISTRMKGRGYERSAKKCKEKWENMNKYYKRVMESSKKQPEHTKTRSYFEKLESF
Links
Other
MADF
family TFs
Other
Brassica rapa
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g133550
Brassica oleracea
Bo2g133550
I
0.964
Cagra.15822s0012
Capsella grandiflora
Cagra.15822s0012
I
0.901
Carubv10027995m.g
Capsella rubella
Carubv10027995m.g
I
0.901
Bostr.14419s0059
Boechera stricta
Bostr.14419s0059
I
0.900
Al_scaffold_0008_21
Arabidopsis lyrata
Al_scaffold_0008_21
I
0.893
AT5G47660
Arabidopsis thaliana
AT5G47660
D
0.893
GLYMA15G12591
Glycine max
GLYMA15G12591
N
0.884
GLYMA09G01670
Glycine max
GLYMA09G01670
N
0.876
Ca_07908
Cicer arietinum
Ca_07908
N
0.875
SapurV1A.0655s0060
Salix purpurea
SapurV1A.0655s0060
I
0.871
MTR_2g026725
Medicago truncatula
MTR_2g026725
I
0.863
Thhalv10000907m.g
Eutrema salsugineum
Thhalv10000907m.g
I
0.849
VIT_00s0956g00030
Vitis vinifera
VIT_00s0956g00030
N
0.835
TCM_030445
Theobroma cacao
TCM_030445
N
0.829
Aquca_037_00343
Aquilegia coerulea
Aquca_037_00343
I
0.825
PRUPE_ppa026454mg
Prunus persica
PRUPE_ppa026454mg
N
0.823
Pm009623
Prunus mume
Pm009623
N
0.823
Eucgr.D02541
Eucalyptus grandis
Eucgr.D02541
I
0.821
VIT_00s0259g00210
Vitis vinifera
VIT_00s0259g00210
N
0.820
PGSC0003DMG400013300
Solanum tuberosum
PGSC0003DMG400013300
N
0.816