Bra022149 (Brassica rapa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bra022149 T248027_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G47660
M02266_2.00
Arabidopsis thaliana
RCGGTAAW

WTTACCGY
PBM
Weirauch et al.(2014)
pTH7911
0.893 0.530
AT5G47660
M06980_2.00
Arabidopsis thaliana
RCRGTWAAAAHDDHW

WDHHDTTTTWACYGY
Dap-seq
OMalley et al.(2016)
AT5G47660_col_a
0.893 0.530
AT5G47660
M06981_2.00
Arabidopsis thaliana
WHHHHRCRGTWAAWW

WWTTWACYGYDDDDW
Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a
0.893 0.530
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022149.1-P MADF 303 371

Links

Other MADF family TFs
Other Brassica rapa TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo2g133550 Brassica oleracea Bo2g133550 I 0.964
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.901
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.901
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.900
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.893
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.893
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.884
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.876
Ca_07908 Cicer arietinum Ca_07908 N 0.875
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.871
MTR_2g026725 Medicago truncatula MTR_2g026725 I 0.863
Thhalv10000907m.g Eutrema salsugineum Thhalv10000907m.g I 0.849
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.835
TCM_030445 Theobroma cacao TCM_030445 N 0.829
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.825
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N 0.823
Pm009623 Prunus mume Pm009623 N 0.823
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.821
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.820
PGSC0003DMG400013300 Solanum tuberosum PGSC0003DMG400013300 N 0.816