fgenesh2_kg.3__1533__AT3G14180.1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 fgenesh2_kg.3__1533__AT3G14180.1 T249061_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASIL2
M06973_2.00
Arabidopsis thaliana
TCRCCGGARAH

DTYTCCGGYGA
Dap-seq
OMalley et al.(2016)
At3g14180_col
0.971 0.986
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.3__1533__AT3G14180.1 MADF 95 172

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ASIL2 Arabidopsis thaliana AT3G14180 D 0.971
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.815
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.829
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.971
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.815
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.971
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.845
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.815
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.832
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.971
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.860
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.892
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.823
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.893
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.892
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.861
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.921
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.925
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.971
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.817
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.841
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.923
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.861
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.892
MDP0000281471 Malus domestica MDP0000281471 I 0.917
MDP0000255104 Malus domestica MDP0000255104 I 0.917
Lus10020652.g Linum usitatissimum Lus10020652.g I 0.852
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.882
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.893
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.823
29814.m000741 Ricinus communis 29814.m000741 I 0.841
29727.m000472 Ricinus communis 29727.m000472 I 0.823
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.842
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.814
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.853
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.840
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.838
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.879
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.832
Bra021536 Brassica rapa Bra021536 I 0.828
Bra021534 Brassica rapa Bra021534 I 0.878
Bo3g065930 Brassica oleracea Bo3g065930 I 0.943
Bo1g134590 Brassica oleracea Bo1g134590 I 0.884
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.828
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.829
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.851
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.909
Pm013209 Prunus mume Pm013209 I 0.918
Cla015773 Citrullus lanatus Cla015773 I 0.892
TCM_029209 Theobroma cacao TCM_029209 I 0.823
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.826
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.874
SELMODRAFT_68041 Selaginella moellendorffii SELMODRAFT_68041 I 0.857
SELMODRAFT_68039 Selaginella moellendorffii SELMODRAFT_68039 I 0.857
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.918
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.821
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.941
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.823
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.826
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.913