MTR_2g026725 (Medicago truncatula)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 MTR_2g026725 T249456_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G47660
M02266_2.00
Arabidopsis thaliana
RCGGTAAW

WTTACCGY
PBM
Weirauch et al.(2014)
pTH7911
0.821 0.529
AT5G47660
M06980_2.00
Arabidopsis thaliana
RCRGTWAAAAHDDHW

WDHHDTTTTWACYGY
Dap-seq
OMalley et al.(2016)
AT5G47660_col_a
0.821 0.529
AT5G47660
M06981_2.00
Arabidopsis thaliana
WHHHHRCRGTWAAWW

WWTTWACYGYDDDDW
Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a
0.821 0.529
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH36993 MADF 278 348

Links

Other MADF family TFs
Other Medicago truncatula TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_07908 Cicer arietinum Ca_07908 N 0.964
GLYMA09G01670 Glycine max GLYMA09G01670 N 0.952
GLYMA15G12591 Glycine max GLYMA15G12591 N 0.940
LjSGA_128947.1 Lotus japonicus LjSGA_128947.1 N 0.905
PGSC0003DMG400013300 Solanum tuberosum PGSC0003DMG400013300 N 0.898
Cucsa.180580 Cucumis sativus Cucsa.180580 N 0.895
VIT_00s0259g00210 Vitis vinifera VIT_00s0259g00210 N 0.891
VIT_00s0956g00030 Vitis vinifera VIT_00s0956g00030 N 0.891
TCM_030445 Theobroma cacao TCM_030445 N 0.889
Cla009202 Citrullus lanatus Cla009202 N 0.887
Aquca_005_00325 Aquilegia coerulea Aquca_005_00325 N 0.883
Solyc11g012720.1 Solanum lycopersicum Solyc11g012720.1 N 0.880
Gorai.010G248600 Gossypium raimondii Gorai.010G248600 N 0.869
Cagra.15822s0012 Capsella grandiflora Cagra.15822s0012 I 0.869
Carubv10027995m.g Capsella rubella Carubv10027995m.g I 0.869
PK17889.1 Cannabis sativa PK17889.1 N 0.868
Bra022149 Brassica rapa Bra022149 I 0.863
Bo2g133550 Brassica oleracea Bo2g133550 I 0.863
PRUPE_ppa026454mg Prunus persica PRUPE_ppa026454mg N 0.843
Pm009623 Prunus mume Pm009623 N 0.843
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.833
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.833
evm.TU.supercontig_27.230 Carica papaya evm.TU.supercontig_27.230 N 0.831
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.824
MDP0000306730 Malus domestica MDP0000306730 N 0.823
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.822
Al_scaffold_0008_21 Arabidopsis lyrata Al_scaffold_0008_21 I 0.821
AT5G47660 Arabidopsis thaliana AT5G47660 D 0.821
Bostr.14419s0059 Boechera stricta Bostr.14419s0059 I 0.821
MDP0000122269 Malus domestica MDP0000122269 I 0.820
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.820
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.820
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.820
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.818
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.818
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.815
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.815
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.815