MTR_3g085960 (Medicago truncatula)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 MTR_3g085960 T249459_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_3g085960
M02270_2.00		 Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.968 0.763
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.964 0.566
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.961 0.592
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.961 0.592
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.961 0.592
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.958 0.658
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.958 0.658
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.958 0.658
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.956 0.776
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.950 0.737
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.947 0.671
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.940 0.500
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.921 0.697
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.910 0.526
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.876 0.447
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02270_2.00 MADF 51 131

DNA Binding Domains

Protein ID Domain From To Sequence
AES72085 MADF 85 165

Links

Other MADF family TFs
Other Medicago truncatula TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.971
Cla023054 Citrullus lanatus Cla023054 I 0.970
MDP0000164819 Malus domestica MDP0000164819 D 0.968
Pm006885 Prunus mume Pm006885 I 0.968
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.967
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.964
Bra026903 Brassica rapa Bra026903 I 0.961
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.961
GT-1 Arabidopsis thaliana AT1G13450 D 0.961
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.960
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.960
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.960
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.959
GT-4 Arabidopsis thaliana AT3G25990 D 0.958
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.957
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.956
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.956
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.954
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.954
Bra019721 Brassica rapa Bra019721 I 0.952
Bo5g017510 Brassica oleracea Bo5g017510 I 0.952
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.951
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.950
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.950
Ca_11315 Cicer arietinum Ca_11315 I 0.950
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.950
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.948
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.947
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.944
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.943
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.943
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.943
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.941
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.940
OS04G0486400 Oryza sativa OS04G0486400 D 0.940
Si036121m.g Setaria italica Si036121m.g I 0.939
Bo8g107400 Brassica oleracea Bo8g107400 I 0.939
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.938
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.937
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.936
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.934
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.934
Si010147m.g Setaria italica Si010147m.g I 0.934
TCM_010751 Theobroma cacao TCM_010751 I 0.933
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.933
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.933
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.932
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.929
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.926
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.926
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.925
OB04G23970 Oryza brachyantha OB04G23970 I 0.925
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.922
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.922
29929.m004704 Ricinus communis 29929.m004704 D 0.921
Bra036354 Brassica rapa Bra036354 I 0.918
Bo2g138840 Brassica oleracea Bo2g138840 I 0.918
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.915
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.913
PK20543.1 Cannabis sativa PK20543.1 D 0.910
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.909
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.908
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.908
mgf016368m Mimulus guttatus mgf016368m I 0.892
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.886
Pm016214 Prunus mume Pm016214 I 0.886
MDP0000275412 Malus domestica MDP0000275412 I 0.881
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.876