OMERI04G10080 (Oryza meridionalis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 OMERI04G10080 T249560_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.872 0.686
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.872 0.686
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.872 0.686
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.825 0.614
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI04G10080.1 MADF 151 230

Links

Other MADF family TFs
Other Oryza meridionalis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28077.m000081 Ricinus communis 28077.m000081 I 0.894
29815.m000504 Ricinus communis 29815.m000504 I 0.853
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.832
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.883
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.893
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.872
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.968
Bo5g137800 Brassica oleracea Bo5g137800 I 0.901
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.872
Bra029812 Brassica rapa Bra029812 I 0.901
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.943
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.872
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.872
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.866
Ca_20148 Cicer arietinum Ca_20148 I 0.829
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.866
Cla018015 Citrullus lanatus Cla018015 I 0.876
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.876
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.829
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.898
F775_31501 Aegilops tauschii F775_31501 I 0.956
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.872
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.884
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.857
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.887
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.857
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.849
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.926
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.942
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.929
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.960
MDP0000201016 Malus domestica MDP0000201016 I 0.868
MDP0000399495 Malus domestica MDP0000399495 I 0.868
MDP0000415733 Malus domestica MDP0000415733 I 0.868
mgf008067m Mimulus guttatus mgf008067m I 0.889
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.939
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.829
OB04G18670 Oryza brachyantha OB04G18670 I 0.958
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.957
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.968
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.968
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.953
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.928
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.854
PK04914.1 Cannabis sativa PK04914.1 D 0.825
Pm026265 Prunus mume Pm026265 I 0.855
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.908
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.889
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.889
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.855
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.880
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.889
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.889
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.889
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.922
Si009787m.g Setaria italica Si009787m.g I 0.925
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.841
TCM_022397 Theobroma cacao TCM_022397 I 0.871
TCM_043551 Theobroma cacao TCM_043551 I 0.851
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.872
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.951
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.951
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.956
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.843
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.882