ONIVA05G15440 (Oryza nivara)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 ONIVA05G15440 T249572_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.908 0.741
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.908 0.741
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA05G15440.1 MADF 102 173
ONIVA05G15440.1 MADF 409 481

Links

Other MADF family TFs
Other Oryza nivara TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.908
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.882
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.917
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.917
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.878
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.871
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.863
30206.m000769 Ricinus communis 30206.m000769 I 0.883
30068.m002635 Ricinus communis 30068.m002635 I 0.918
29576.m000223 Ricinus communis 29576.m000223 I 0.869
Pm024289 Prunus mume Pm024289 I 0.930
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.917
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.902
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.922
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.867
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.847
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.933
mgf021983m Mimulus guttatus mgf021983m I 0.869
mgf004276m Mimulus guttatus mgf004276m I 0.907
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.902
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.902
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.865
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.845
Pm022572 Prunus mume Pm022572 I 0.871
Pm022570 Prunus mume Pm022570 I 0.890
Pm001889 Prunus mume Pm001889 I 0.841
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.926
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.916
TCM_035571 Theobroma cacao TCM_035571 I 0.855
TCM_035565 Theobroma cacao TCM_035565 I 0.870
TCM_015563 Theobroma cacao TCM_015563 I 0.925
TCM_001348 Theobroma cacao TCM_001348 I 0.870
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.890
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.851
Si034382m.g Setaria italica Si034382m.g I 0.936
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.926
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.916
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.919
Cla007910 Citrullus lanatus Cla007910 I 0.871
Cla005046 Citrullus lanatus Cla005046 I 0.931
Cla001992 Citrullus lanatus Cla001992 I 0.845
Ca_25135 Cicer arietinum Ca_25135 I 0.868
Ca_04386 Cicer arietinum Ca_04386 I 0.852
Ca_04385 Cicer arietinum Ca_04385 I 0.834
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.895
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.855
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.926
Si016578m.g Setaria italica Si016578m.g I 0.903
PK26613.1 Cannabis sativa PK26613.1 I 0.858
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.924
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.931
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.933
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.915
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.899
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.894
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.873
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.925
MDP0000701272 Malus domestica MDP0000701272 I 0.927
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.919
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.861
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.826
PK24122.1 Cannabis sativa PK24122.1 I 0.840
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.847
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.913
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.856
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.873
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.849
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.856
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.930
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.882
MDP0000451107 Malus domestica MDP0000451107 I 0.869
MDP0000451038 Malus domestica MDP0000451038 I 0.924
MDP0000156139 Malus domestica MDP0000156139 I 0.874
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.865
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.899
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.925
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.894
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.873
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.847
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.882
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.908
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.901
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.892
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.928
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.914
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.870
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.861
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.826
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.903
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.864
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.918
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.871
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.875
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.901
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.847
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.858
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.887
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.874
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.914
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.929
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.903
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.901
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.927
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.859
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.863
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.872
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.932
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.883
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.850
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.845
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.942
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.921
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.926
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.913
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.932
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.928
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.948
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.859
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.865
Bra003702 Brassica rapa Bra003702 I 0.861
Bo8g027460 Brassica oleracea Bo8g027460 I 0.860
Bo6g120870 Brassica oleracea Bo6g120870 I 0.847
Bo6g083690 Brassica oleracea Bo6g083690 I 0.847
Bo6g049430 Brassica oleracea Bo6g049430 I 0.908
Bo2g091240 Brassica oleracea Bo2g091240 I 0.871
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.920
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.936
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.971
Bra003703 Brassica rapa Bra003703 I 0.846
Bra008285 Brassica rapa Bra008285 I 0.833
Bra015716 Brassica rapa Bra015716 I 0.847
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.908
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.856
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.908
F775_26337 Aegilops tauschii F775_26337 I 0.926
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.933
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.907
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.902
Bra040010 Brassica rapa Bra040010 I 0.908
Bra036731 Brassica rapa Bra036731 I 0.860
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.931
Si012121m.g Setaria italica Si012121m.g I 0.933
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.925
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.866
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.868
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.855
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.868
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.930
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.882
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.851
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.920
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.893
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.930
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.871
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.898
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.899
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.899
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.898
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.847
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.927
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.925
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.912
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.873
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.936
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.932
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.932
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.933
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.920
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.936
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.932
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.971
OBART04G20290 Oryza barthii OBART04G20290 I 0.936
OBART02G25970 Oryza barthii OBART02G25970 I 0.969
OB04G27270 Oryza brachyantha OB04G27270 I 0.939
OB02G33250 Oryza brachyantha OB02G33250 I 0.970
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.920
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.932
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.936
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.971
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.932
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.969
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.928
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.939
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.968
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.920
F775_24861 Aegilops tauschii F775_24861 N 0.851
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.817
mgf015314m Mimulus guttatus mgf015314m N 0.823
mgf018892m Mimulus guttatus mgf018892m N 0.857
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.817
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.820