PGSC0003DMG400002727 (Solanum tuberosum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 PGSC0003DMG400002727 T249617_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.950 0.819
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.950 0.819
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.950 0.819
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.946 0.764
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400007059 MADF 155 234

Links

Other MADF family TFs
Other Solanum tuberosum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_31501 Aegilops tauschii F775_31501 I 0.854
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.877
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.937
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.890
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.949
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.950
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.950
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.854
Bo5g137800 Brassica oleracea Bo5g137800 I 0.946
Bra029812 Brassica rapa Bra029812 I 0.946
PK04914.1 Cannabis sativa PK04914.1 D 0.946
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.943
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.943
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.896
Ca_20148 Cicer arietinum Ca_20148 I 0.963
Cla018015 Citrullus lanatus Cla018015 I 0.964
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.960
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.964
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.959
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.943
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.929
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.969
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.923
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.969
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.834
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.956
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.866
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.852
MDP0000399495 Malus domestica MDP0000399495 I 0.921
MDP0000201016 Malus domestica MDP0000201016 I 0.921
MDP0000415733 Malus domestica MDP0000415733 I 0.921
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.956
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.965
mgf008067m Mimulus guttatus mgf008067m I 0.941
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.895
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.905
OB04G18670 Oryza brachyantha OB04G18670 I 0.854
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.854
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.854
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.854
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.854
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.854
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.841
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.844
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.886
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.925
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.890
Pm026265 Prunus mume Pm026265 I 0.950
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.927
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.950
29815.m000504 Ricinus communis 29815.m000504 I 0.952
28077.m000081 Ricinus communis 28077.m000081 I 0.891
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.885
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.885
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.925
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.855
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.855
Si009787m.g Setaria italica Si009787m.g I 0.838
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.968
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.839
TCM_043551 Theobroma cacao TCM_043551 I 0.898
TCM_022397 Theobroma cacao TCM_022397 I 0.947
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.854
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.854
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.854
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.933
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.963
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.842