PGSC0003DMG400010197 (Solanum tuberosum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 PGSC0003DMG400010197 T249621_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.838 0.611
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.838 0.611
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.836 0.625
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.836 0.625
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400026431 MADF 36 116
PGSC0003DMT400026432 MADF 36 116

Links

Other MADF family TFs
Other Solanum tuberosum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.954
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.900
mgf006505m Mimulus guttatus mgf006505m I 0.898
mgf000047m Mimulus guttatus mgf000047m I 0.897
PK27986.1 Cannabis sativa PK27986.1 I 0.892
MDP0000301451 Malus domestica MDP0000301451 I 0.891
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.891
Cla009854 Citrullus lanatus Cla009854 I 0.890
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.888
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.887
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.884
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.884
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.880
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.872
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.863
TCM_029695 Theobroma cacao TCM_029695 I 0.863
Ca_00394 Cicer arietinum Ca_00394 I 0.863
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.863
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.863
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.862
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.862
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.862
TCM_042467 Theobroma cacao TCM_042467 N 0.854
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.852
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.851
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.851
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.849
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.849
Bra034866 Brassica rapa Bra034866 I 0.844
mgf001239m Mimulus guttatus mgf001239m N 0.843
29814.m000741 Ricinus communis 29814.m000741 I 0.839
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.838
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.838
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.838
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.838
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.838
MDP0000097759 Malus domestica MDP0000097759 N 0.837
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.836
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.836
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.836
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.835
Bo6g075950 Brassica oleracea Bo6g075950 I 0.835
Bra003346 Brassica rapa Bra003346 I 0.835
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.834
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.834
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.834
Bra034165 Brassica rapa Bra034165 I 0.834
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.834
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.831
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.830
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.830
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.830
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.830
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.829
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.812