POPTR_0003s11850 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0003s11850 T249666_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.854 0.653
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.854 0.653
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s11850.1 MADF 39 119

Links

Other MADF family TFs
Other Populus trichocarpa TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.960
Ca_00394 Cicer arietinum Ca_00394 I 0.955
TCM_029695 Theobroma cacao TCM_029695 I 0.955
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.955
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.955
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.955
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.954
PK27986.1 Cannabis sativa PK27986.1 I 0.942
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.941
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.940
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.936
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.932
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.932
Cla009854 Citrullus lanatus Cla009854 I 0.930
MDP0000301451 Malus domestica MDP0000301451 I 0.930
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.924
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.923
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.922
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.905
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.900
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.887
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.874
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.868
29900.m001628 Ricinus communis 29900.m001628 I 0.865
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.865
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.863
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.862
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.854
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.854
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.854
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.854
Bra003346 Brassica rapa Bra003346 I 0.853
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.853
Bo6g075950 Brassica oleracea Bo6g075950 I 0.853
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.851
Ca_19877 Cicer arietinum Ca_19877 I 0.846
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.845
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.842
mgf001239m Mimulus guttatus mgf001239m N 0.841
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.841
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.831
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.821
Cla019967 Citrullus lanatus Cla019967 I 0.821
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.821
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.821
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.817
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.817
29814.m000741 Ricinus communis 29814.m000741 I 0.816
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.815
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.815
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.814