POPTR_0005s21410 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0005s21410 T249670_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.853 0.696
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.853 0.696
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW

WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.826 0.733
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0005s21410.1 MADF 82 150
POPTR_0005s21410.1 MADF 421 492

Links

Other MADF family TFs
Other Populus trichocarpa TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29848.m004557 Ricinus communis 29848.m004557 N 0.000
cassava18401.valid.m1 Manihot esculenta cassava18401.valid.m1 N 0.000
cassava18402.valid.m1 Manihot esculenta cassava18402.valid.m1 N 0.000
cassava18403.valid.m1 Manihot esculenta cassava18403.valid.m1 N 0.000
Ca_01725 Cicer arietinum Ca_01725 N 0.000
Gorai.001G036900 Gossypium raimondii Gorai.001G036900 N 0.000
Gorai.010G244100 Gossypium raimondii Gorai.010G244100 N 0.000
Lus10005339.g Linum usitatissimum Lus10005339.g N 0.000
Lus10041019.g Linum usitatissimum Lus10041019.g N 0.000
TCM_036924 Theobroma cacao TCM_036924 N 0.000
VIT_04s0008g05880 Vitis vinifera VIT_04s0008g05880 N 0.000