POPTR_0006s23800 (Populus trichocarpa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 POPTR_0006s23800 T249673_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.937 0.742
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.937 0.742
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.876 0.652
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s23800.1 MADF 439 507

Links

Other MADF family TFs
Other Populus trichocarpa TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.971
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.961
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.961
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.961
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.961
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.956
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.955
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.955
29739.m003611 Ricinus communis 29739.m003611 I 0.954
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.946
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.944
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.944
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.944
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.944
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.941
OB02G10400 Oryza brachyantha OB02G10400 I 0.940
Si033157m.g Setaria italica Si033157m.g I 0.939
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.937
OS02G0104500 Oryza sativa OS02G0104500 D 0.937
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.937
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.937
OBART02G00380 Oryza barthii OBART02G00380 I 0.937
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.937
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.937
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.937
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.937
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.937
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.933
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.932
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.930
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.928
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.928
TCM_037381 Theobroma cacao TCM_037381 I 0.922
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.921
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.921
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.921
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.914
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.911
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.897
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.896
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.895
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.895
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.887
MDP0000122269 Malus domestica MDP0000122269 I 0.887
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.887
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.886
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.886
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.876
PK15172.1 Cannabis sativa PK15172.1 D 0.876
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.876
Bo6g083670 Brassica oleracea Bo6g083670 I 0.867
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.867
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.867
PK14727.1 Cannabis sativa PK14727.1 I 0.866
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.864
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.862
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.860
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.855
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.851
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.841
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.832
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.829
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.829
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.828
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.827
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.827
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.826
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.822
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.812