GT-1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 scaffold_101505.1 T249777_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.967 0.775
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.967 0.775
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.967 0.775
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.964 0.606
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.961 0.592
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.950 0.620
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.949 0.521
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.949 0.521
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.949 0.521
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.944 0.592
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.939 0.577
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.936 0.535
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.912 0.620
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.905 0.521
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.894 0.521
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02274_2.00 MADF 53 130

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_101505.1 MADF 98 175

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.968
Bra026903 Brassica rapa Bra026903 I 0.968
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.967
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.967
GT-1 Arabidopsis thaliana AT1G13450 D 0.967
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.965
Cla023054 Citrullus lanatus Cla023054 I 0.964
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.964
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.964
MDP0000164819 Malus domestica MDP0000164819 D 0.961
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.961
Pm006885 Prunus mume Pm006885 I 0.961
Bo5g017510 Brassica oleracea Bo5g017510 I 0.961
Bra019721 Brassica rapa Bra019721 I 0.961
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.960
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.959
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.950
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.950
OS04G0486400 Oryza sativa OS04G0486400 D 0.950
Bo8g107400 Brassica oleracea Bo8g107400 I 0.950
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.949
GT-4 Arabidopsis thaliana AT3G25990 D 0.949
Si036121m.g Setaria italica Si036121m.g I 0.949
TCM_010751 Theobroma cacao TCM_010751 I 0.944
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.944
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.944
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.944
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.944
Si010147m.g Setaria italica Si010147m.g I 0.944
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.944
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.944
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.942
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.939
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.939
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.939
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.939
Ca_11315 Cicer arietinum Ca_11315 I 0.939
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.937
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.937
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.936
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.936
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.935
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.932
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.931
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.931
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.931
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.928
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.926
OB04G23970 Oryza brachyantha OB04G23970 I 0.925
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.925
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.925
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.923
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.923
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.920
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.915
PK20543.1 Cannabis sativa PK20543.1 D 0.912
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.912
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.909
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.909
Bo2g138840 Brassica oleracea Bo2g138840 I 0.905
29929.m004704 Ricinus communis 29929.m004704 D 0.905
Bra036354 Brassica rapa Bra036354 I 0.901
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.896
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.894
mgf016368m Mimulus guttatus mgf016368m I 0.891
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.888
Pm016214 Prunus mume Pm016214 I 0.888
MDP0000275412 Malus domestica MDP0000275412 I 0.883