scaffold_301280.1 (Arabidopsis lyrata)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 scaffold_301280.1 T249779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.874 0.701
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.874 0.701
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301280.1 MADF 37 109

Links

Other MADF family TFs
Other Arabidopsis lyrata TFs

Invalid Input OrderBy

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action