Si036121m.g (Setaria italica)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Si036121m.g T249822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.970 0.887
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.949 0.606
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.945 0.634
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.945 0.634
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.945 0.634
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.939 0.549
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.933 0.634
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.924 0.549
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.924 0.549
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.924 0.549
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.908 0.535
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.906 0.620
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.898 0.634
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.896 0.634
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.896 0.563
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.857 0.493
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si036121m MADF 63 139

Links

Other MADF family TFs
Other Setaria italica TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004704 Ricinus communis 29929.m004704 D 0.896
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.929
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.917
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.888
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.886
Bo2g138840 Brassica oleracea Bo2g138840 I 0.885
Bo5g017510 Brassica oleracea Bo5g017510 I 0.945
Bo8g107400 Brassica oleracea Bo8g107400 I 0.915
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.897
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.945
Bra019721 Brassica rapa Bra019721 I 0.945
Bra026903 Brassica rapa Bra026903 I 0.945
Bra036354 Brassica rapa Bra036354 I 0.885
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.945
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.898
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.945
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.898
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.898
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.898
Ca_11315 Cicer arietinum Ca_11315 I 0.898
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.886
Cla023054 Citrullus lanatus Cla023054 I 0.938
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.932
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.898
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.923
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.950
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.898
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.896
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.908
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.906
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.908
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.924
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.967
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.917
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.871
GT-1 Arabidopsis thaliana AT1G13450 D 0.945
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.949
GT-4 Arabidopsis thaliana AT3G25990 D 0.924
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.939
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.873
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.878
MDP0000164819 Malus domestica MDP0000164819 D 0.933
MDP0000275412 Malus domestica MDP0000275412 I 0.886
mgf016368m Mimulus guttatus mgf016368m I 0.891
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.966
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.939
OB04G23970 Oryza brachyantha OB04G23970 I 0.951
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.886
OS04G0486400 Oryza sativa OS04G0486400 D 0.970
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.955
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.939
PK20543.1 Cannabis sativa PK20543.1 D 0.906
Pm006885 Prunus mume Pm006885 I 0.933
Pm016214 Prunus mume Pm016214 I 0.881
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.916
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.898
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.881
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.945
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.925
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.898
Si010147m.g Setaria italica Si010147m.g I 0.968
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.899
TCM_010751 Theobroma cacao TCM_010751 I 0.924
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.903
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.945
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.906
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.909
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.857