Solyc02g076810.2 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc02g076810.2 T249883_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G58630
M06976_2.00
Arabidopsis thaliana
HNTCGCCGGARWHDN

NHDWYTCCGGCGAND
Dap-seq
OMalley et al.(2016)
AT3G58630_col_a
0.836 0.625
AT3G58630
M06977_2.00
Arabidopsis thaliana
NNTCGCCGGARWHDN

NHDWYTCCGGCGANN
Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a
0.836 0.625
AT5G05550
M06978_2.00
Arabidopsis thaliana
HNDYCGCCGGMRWND

HNWYKCCGGCGRHND
Dap-seq
OMalley et al.(2016)
AT5G05550_col_a
0.826 0.597
AT5G05550
M06979_2.00
Arabidopsis thaliana
HYNYCGCCGGARWHD

HDWYTCCGGCGRNRD
Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a
0.826 0.597
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g076810.2.1 MADF 36 116

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.954
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.912
PK27986.1 Cannabis sativa PK27986.1 I 0.912
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.911
MDP0000301451 Malus domestica MDP0000301451 I 0.911
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.908
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.905
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.905
Cla009854 Citrullus lanatus Cla009854 I 0.903
mgf006505m Mimulus guttatus mgf006505m I 0.898
mgf000047m Mimulus guttatus mgf000047m I 0.897
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.896
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.894
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.888
Ca_00394 Cicer arietinum Ca_00394 I 0.888
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.888
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.888
TCM_029695 Theobroma cacao TCM_029695 I 0.888
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.887
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.887
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.887
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.878
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.878
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.862
TCM_042467 Theobroma cacao TCM_042467 N 0.854
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.851
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.849
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.849
Bra034866 Brassica rapa Bra034866 I 0.844
mgf001239m Mimulus guttatus mgf001239m N 0.843
29814.m000741 Ricinus communis 29814.m000741 I 0.839
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.838
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.838
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.838
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.838
MDP0000097759 Malus domestica MDP0000097759 N 0.837
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.836
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.836
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.836
Bra003346 Brassica rapa Bra003346 I 0.835
Bo6g075950 Brassica oleracea Bo6g075950 I 0.835
Bra034165 Brassica rapa Bra034165 I 0.834
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.834
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.834
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.834
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.831
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.830
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.830
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.830
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.830
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.829
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.826
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.822
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.815