Solyc04g071360.2 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc04g071360.2 T249886_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.849 0.664
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.849 0.664
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW

WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.818 0.635
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g071360.2.1 MADF 75 145
Solyc04g071360.2.1 MADF 474 547

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29576.m000223 Ricinus communis 29576.m000223 I 0.952
30068.m002635 Ricinus communis 30068.m002635 I 0.866
30206.m000769 Ricinus communis 30206.m000769 I 0.908
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.851
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.898
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.884
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.886
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.849
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.849
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.818
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.851
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.894
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.882
Bo2g091240 Brassica oleracea Bo2g091240 I 0.900
Bo6g049430 Brassica oleracea Bo6g049430 I 0.849
Bo6g083690 Brassica oleracea Bo6g083690 I 0.926
Bo6g120870 Brassica oleracea Bo6g120870 I 0.926
Bo8g027460 Brassica oleracea Bo8g027460 I 0.888
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.926
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.894
Bra003702 Brassica rapa Bra003702 I 0.923
Bra003703 Brassica rapa Bra003703 I 0.926
Bra008285 Brassica rapa Bra008285 I 0.918
Bra015716 Brassica rapa Bra015716 I 0.926
Bra036731 Brassica rapa Bra036731 I 0.893
Bra040010 Brassica rapa Bra040010 I 0.849
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.829
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.876
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.897
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.927
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.926
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.855
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.843
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.927
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.926
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.941
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.934
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.931
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.865
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.865
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.865
Ca_04385 Cicer arietinum Ca_04385 I 0.921
Ca_04386 Cicer arietinum Ca_04386 I 0.943
Ca_25135 Cicer arietinum Ca_25135 I 0.933
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.937
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.938
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.880
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.877
Cla001992 Citrullus lanatus Cla001992 I 0.921
Cla005046 Citrullus lanatus Cla005046 I 0.874
Cla007910 Citrullus lanatus Cla007910 I 0.914
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.879
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.921
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.918
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.936
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.887
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.885
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.882
F775_24861 Aegilops tauschii F775_24861 N 0.865
F775_26337 Aegilops tauschii F775_26337 I 0.896
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.881
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.880
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.927
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.883
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.932
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.831
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.826
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.831
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.929
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.940
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.929
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.940
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.945
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.875
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.880
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.858
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.927
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.941
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.879
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.841
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.858
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.871
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.850
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.877
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.813
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.872
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.826
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.846
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.877
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.891
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.935
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.885
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.890
MDP0000156139 Malus domestica MDP0000156139 I 0.929
MDP0000451038 Malus domestica MDP0000451038 I 0.869
MDP0000451107 Malus domestica MDP0000451107 I 0.925
MDP0000701272 Malus domestica MDP0000701272 I 0.887
mgf004276m Mimulus guttatus mgf004276m I 0.885
mgf015314m Mimulus guttatus mgf015314m N 0.873
mgf018892m Mimulus guttatus mgf018892m N 0.939
mgf021983m Mimulus guttatus mgf021983m I 0.951
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.899
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.849
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.856
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.930
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.948
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.931
OB02G33250 Oryza brachyantha OB02G33250 I 0.851
OB04G27270 Oryza brachyantha OB04G27270 I 0.893
OBART02G25970 Oryza barthii OBART02G25970 I 0.862
OBART04G20290 Oryza barthii OBART04G20290 I 0.894
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.851
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.854
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.894
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.882
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.906
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.854
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.882
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.865
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.894
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.851
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.882
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.836
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.898
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.893
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.880
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.937
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.938
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.877
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.862
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.854
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.851
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.865
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.894
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.882
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.847
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.888
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.846
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.827
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.888
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.971
PK24122.1 Cannabis sativa PK24122.1 I 0.944
PK26613.1 Cannabis sativa PK26613.1 I 0.916
Pm022570 Prunus mume Pm022570 I 0.880
Pm022572 Prunus mume Pm022572 I 0.917
Pm024289 Prunus mume Pm024289 I 0.872
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.898
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.872
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.938
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.944
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.947
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.942
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.868
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.887
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.872
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.917
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.882
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.870
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.940
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.930
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.897
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.872
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.944
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.932
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.895
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.944
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.895
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.843
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.879
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.926
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.879
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.859
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.859
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.879
Si012121m.g Setaria italica Si012121m.g I 0.888
Si016578m.g Setaria italica Si016578m.g I 0.843
Si034382m.g Setaria italica Si034382m.g I 0.872
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.878
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.958
TCM_001348 Theobroma cacao TCM_001348 I 0.894
TCM_015563 Theobroma cacao TCM_015563 I 0.865
TCM_035565 Theobroma cacao TCM_035565 I 0.951
TCM_035571 Theobroma cacao TCM_035571 I 0.938
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.843
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.926
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.888
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.883
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.896
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.888
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.817
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.914
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.939