Solyc12g010890.1 (Solanum lycopersicum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Solyc12g010890.1 T249895_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.940 0.736
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.940 0.736
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g010890.1.1 MADF 69 149

Links

Other MADF family TFs
Other Solanum lycopersicum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.949
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.945
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.940
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.940
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.940
Bo6g075950 Brassica oleracea Bo6g075950 I 0.940
Bra003346 Brassica rapa Bra003346 I 0.940
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.940
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.939
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.937
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.935
Ca_00394 Cicer arietinum Ca_00394 I 0.935
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.935
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.935
TCM_029695 Theobroma cacao TCM_029695 I 0.935
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.931
MDP0000301451 Malus domestica MDP0000301451 I 0.930
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.929
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.924
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.923
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.923
Cla009854 Citrullus lanatus Cla009854 I 0.923
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.920
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.918
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.917
PK27986.1 Cannabis sativa PK27986.1 I 0.917
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.917
29900.m001628 Ricinus communis 29900.m001628 I 0.917
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.912
Bra007407 Brassica rapa Bra007407 I 0.912
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.911
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.910
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.910
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.910
Ca_19877 Cicer arietinum Ca_19877 I 0.908
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.906
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.906
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.905
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.900
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.896
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.875
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.873
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.867
Cla002288 Citrullus lanatus Cla002288 I 0.866
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.858
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.857
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.852
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.844
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.844
OBART05G25610 Oryza barthii OBART05G25610 I 0.844
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.844
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.844
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.844
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.844
OS05G0560600 Oryza sativa OS05G0560600 I 0.844
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.844
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.842
mgf001239m Mimulus guttatus mgf001239m N 0.838
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.836
Cla019967 Citrullus lanatus Cla019967 I 0.836
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.836
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.834
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.834
Ca_02494 Cicer arietinum Ca_02494 N 0.830
Si022565m.g Setaria italica Si022565m.g I 0.829
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.829
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.829
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.829
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.829
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.829
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.822
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.819
29814.m000741 Ricinus communis 29814.m000741 I 0.817
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.815
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.815
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.815