TCM_010751 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_010751 T249937_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.961 0.824
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.956 0.632
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.953 0.809
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.950 0.706
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.944 0.735
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.940 0.824
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.939 0.735
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.939 0.735
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.939 0.735
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.938 0.765
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.933 0.618
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.925 0.765
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.906 0.647
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.906 0.647
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.906 0.647
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.874 0.485
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY00815 MADF 84 163

Links

Other MADF family TFs
Other Theobroma cacao TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29929.m004704 Ricinus communis 29929.m004704 D 0.938
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.909
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.960
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.952
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.932
Bo2g138840 Brassica oleracea Bo2g138840 I 0.882
Bo5g017510 Brassica oleracea Bo5g017510 I 0.935
Bo8g107400 Brassica oleracea Bo8g107400 I 0.951
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.951
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.942
Bra019721 Brassica rapa Bra019721 I 0.935
Bra026903 Brassica rapa Bra026903 I 0.951
Bra036354 Brassica rapa Bra036354 I 0.882
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.946
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.942
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.946
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.942
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.961
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.961
Ca_11315 Cicer arietinum Ca_11315 I 0.956
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.956
Cla023054 Citrullus lanatus Cla023054 I 0.933
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.926
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.950
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.928
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.943
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.952
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.950
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.956
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.956
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.961
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.971
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.925
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.956
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.930
GT-1 Arabidopsis thaliana AT1G13450 D 0.941
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.944
GT-4 Arabidopsis thaliana AT3G25990 D 0.906
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.933
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.951
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.948
MDP0000164819 Malus domestica MDP0000164819 D 0.940
MDP0000275412 Malus domestica MDP0000275412 I 0.931
mgf016368m Mimulus guttatus mgf016368m I 0.909
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.928
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.933
OB04G23970 Oryza brachyantha OB04G23970 I 0.889
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.956
OS04G0486400 Oryza sativa OS04G0486400 D 0.925
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.925
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.932
PK20543.1 Cannabis sativa PK20543.1 D 0.953
Pm006885 Prunus mume Pm006885 I 0.940
Pm016214 Prunus mume Pm016214 I 0.934
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.968
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.940
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.934
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.940
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.959
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.954
Si010147m.g Setaria italica Si010147m.g I 0.917
Si036121m.g Setaria italica Si036121m.g I 0.924
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.917
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.954
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.946
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.956
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.964
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.874