CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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VIT_17s0000g10420
(
Vitis vinifera
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF10545 (MADF_DNA_bdg)
IPR006578
VIT_17s0000g10420
T250008_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV
BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC
GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.894
0.500
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM
KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.884
0.446
GT-1
M10896_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.884
0.446
GT-1
M10897_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.884
0.446
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN
NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.876
0.459
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN
NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.876
0.405
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN
NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.866
0.405
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN
NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.866
0.405
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.862
0.378
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.855
0.419
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.849
0.378
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.849
0.378
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.849
0.378
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.823
0.392
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN
NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.812
0.365
For this family, TFs with SR scores >
0.812
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02275_2.00
MADF
51
128
IAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWRNLLKDYKKAQQRDGGSGKMYYEELEEFYAEKKR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
VIT_17s0000g10420.t01
MADF
76
153
IAFRRELDEFFNTSKSNKHLWEQIAARMSELGYDRTAAMCTDKWRNLLKDYKKAQQRDGGSGKMYYEELEEFYAEKKR
Links
Other
MADF
family TFs
Other
Vitis vinifera
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo8g107400
Brassica oleracea
Bo8g107400
I
0.924
Bostr.13671s0104
Boechera stricta
Bostr.13671s0104
I
0.894
GT-1
Arabidopsis lyrata
scaffold_101505.1
D
0.894
Cagra.3501s0157
Capsella grandiflora
Cagra.3501s0157
I
0.886
Bra026903
Brassica rapa
Bra026903
I
0.886
Carubv10009313m.g
Capsella rubella
Carubv10009313m.g
I
0.886
Thhalv10007959m.g
Eutrema salsugineum
Thhalv10007959m.g
I
0.886
GT-1
Arabidopsis thaliana
AT1G13450
D
0.884
Thhalv10004359m.g
Eutrema salsugineum
Thhalv10004359m.g
I
0.882
GLYMA18G01360
Glycine max
GLYMA18G01360
I
0.880
LjT04G17.70.nc
Lotus japonicus
LjT04G17.70.nc
I
0.876
VIT_01s0010g02420
Vitis vinifera
VIT_01s0010g02420
I
0.876
Gorai.008G163200
Gossypium raimondii
Gorai.008G163200
I
0.876
MTR_3g085960
Medicago truncatula
MTR_3g085960
D
0.876
Cla023054
Citrullus lanatus
Cla023054
I
0.876
GLYMA11G37390
Glycine max
GLYMA11G37390
D
0.876
AMTR_s00055p00209070
Amborella trichopoda
AMTR_s00055p00209070
I
0.874
TCM_010751
Theobroma cacao
TCM_010751
I
0.874
Gorai.009G333800
Gossypium raimondii
Gorai.009G333800
I
0.874
SapurV1A.0206s0170
Salix purpurea
SapurV1A.0206s0170
I
0.873
PRUPE_ppa009404mg
Prunus persica
PRUPE_ppa009404mg
I
0.868
Bo5g017510
Brassica oleracea
Bo5g017510
I
0.867
Bra019721
Brassica rapa
Bra019721
I
0.867
Ca_11315
Cicer arietinum
Ca_11315
I
0.866
MDP0000164819
Malus domestica
MDP0000164819
D
0.866
cassava11841.valid.m1
Manihot esculenta
cassava11841.valid.m1
I
0.866
Eucgr.B03456
Eucalyptus grandis
Eucgr.B03456
I
0.866
Pm006885
Prunus mume
Pm006885
I
0.866
cassava13991.valid.m1
Manihot esculenta
cassava13991.valid.m1
D
0.866
POPTR_0010s06510
Populus trichocarpa
POPTR_0010s06510
I
0.866
Cucsa.394820
Cucumis sativus
Cucsa.394820
I
0.864
fgenesh2_kg.5__353__AT3G25990.1
Arabidopsis lyrata
fgenesh2_kg.5__353__AT3G25990.1
D
0.862
POPTR_0008s17980
Populus trichocarpa
POPTR_0008s17980
I
0.862
evm.TU.supercontig_130.35
Carica papaya
evm.TU.supercontig_130.35
I
0.861
Si036121m.g
Setaria italica
Si036121m.g
I
0.857
OS04G0486400
Oryza sativa
OS04G0486400
D
0.855
Pavir.Ga01561
Panicum virgatum
Pavir.Ga01561
I
0.855
GRMZM2G047370
Zea mays
GRMZM2G047370
I
0.855
VIT_14s0171g00450
Vitis vinifera
VIT_14s0171g00450
I
0.853
evm.TU.supercontig_1453.1
Carica papaya
evm.TU.supercontig_1453.1
I
0.853
AMTR_s00005p00185670
Amborella trichopoda
AMTR_s00005p00185670
I
0.852
Eucgr.J02286
Eucalyptus grandis
Eucgr.J02286
I
0.852
Ciclev10031750m.g
Citrus clementina
Ciclev10031750m.g
I
0.850
orange1.1g015940m.g
Citrus sinensis
orange1.1g015940m.g
I
0.850
GSMUA_Achr3G19370_001
Musa acuminata
GSMUA_Achr3G19370_001
I
0.849
GT-4
Arabidopsis thaliana
AT3G25990
D
0.849
Bra036354
Brassica rapa
Bra036354
I
0.845
SapurV1A.1719s0020
Salix purpurea
SapurV1A.1719s0020
I
0.843
Lus10036978.g
Linum usitatissimum
Lus10036978.g
I
0.842
Si010147m.g
Setaria italica
Si010147m.g
I
0.841
Bo2g138840
Brassica oleracea
Bo2g138840
I
0.839
Cagra.6197s0012
Capsella grandiflora
Cagra.6197s0012
I
0.838
Aquca_011_00297
Aquilegia coerulea
Aquca_011_00297
I
0.838
Carubv10017413m.g
Capsella rubella
Carubv10017413m.g
I
0.838
MLOC_64014
Hordeum vulgare
MLOC_64014
I
0.837
Lus10015824.g
Linum usitatissimum
Lus10015824.g
I
0.836
OB04G23970
Oryza brachyantha
OB04G23970
I
0.835
Bostr.0556s0275
Boechera stricta
Bostr.0556s0275
I
0.833
Aquca_123_00031
Aquilegia coerulea
Aquca_123_00031
I
0.827
PK20543.1
Cannabis sativa
PK20543.1
D
0.823
Solyc12g077540.1
Solanum lycopersicum
Solyc12g077540.1
I
0.821
PDK_20s1345831g002
Phoenix dactylifera
PDK_20s1345831g002
I
0.819
GSMUA_Achr5G17240_001
Musa acuminata
GSMUA_Achr5G17240_001
I
0.814
29929.m004704
Ricinus communis
29929.m004704
D
0.812