Cla005046 (Citrullus lanatus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cla005046 T250127_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.914 0.801
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.914 0.801
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005046 MADF 105 176
Cla005046 MADF 485 554

Links

Other MADF family TFs
Other Citrullus lanatus TFs

192 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.914
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.868
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.951
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.951
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.893
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.887
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.888
30206.m000769 Ricinus communis 30206.m000769 I 0.890
30068.m002635 Ricinus communis 30068.m002635 I 0.952
29576.m000223 Ricinus communis 29576.m000223 I 0.896
Pm024289 Prunus mume Pm024289 I 0.959
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.951
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.898
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.967
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.867
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.878
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.947
mgf021983m Mimulus guttatus mgf021983m I 0.881
mgf004276m Mimulus guttatus mgf004276m I 0.933
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.914
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.921
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.877
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.847
Pm022572 Prunus mume Pm022572 I 0.895
Pm022570 Prunus mume Pm022570 I 0.877
Pm001889 Prunus mume Pm001889 I 0.871
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.939
TCM_035571 Theobroma cacao TCM_035571 I 0.884
TCM_035565 Theobroma cacao TCM_035565 I 0.885
TCM_015563 Theobroma cacao TCM_015563 I 0.957
TCM_001348 Theobroma cacao TCM_001348 I 0.880
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.911
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.874
Si034382m.g Setaria italica Si034382m.g I 0.949
Si016578m.g Setaria italica Si016578m.g I 0.890
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.945
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.951
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.939
Cla007910 Citrullus lanatus Cla007910 I 0.884
Cla001992 Citrullus lanatus Cla001992 I 0.847
Ca_25135 Cicer arietinum Ca_25135 I 0.875
Ca_04386 Cicer arietinum Ca_04386 I 0.881
Ca_04385 Cicer arietinum Ca_04385 I 0.866
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.907
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.877
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.952
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.876
Si012121m.g Setaria italica Si012121m.g I 0.952
PK26613.1 Cannabis sativa PK26613.1 I 0.840
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.942
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.944
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.946
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.894
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.887
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.896
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.876
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.944
MDP0000701272 Malus domestica MDP0000701272 I 0.948
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.953
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.874
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.857
PK24122.1 Cannabis sativa PK24122.1 I 0.871
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.878
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.921
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.888
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.883
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.877
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.888
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.954
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.889
MDP0000451107 Malus domestica MDP0000451107 I 0.884
MDP0000451038 Malus domestica MDP0000451038 I 0.961
MDP0000156139 Malus domestica MDP0000156139 I 0.889
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.902
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.887
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.944
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.896
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.876
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.878
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.868
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.917
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.910
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.892
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.944
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.955
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.869
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.876
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.845
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.943
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.870
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.953
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.885
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.877
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.878
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.883
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.894
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.925
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.921
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.890
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.888
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.947
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.869
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.891
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.869
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.881
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.951
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.923
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.875
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.882
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.912
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.920
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.949
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.937
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.957
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.950
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.920
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.879
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.933
Bra003702 Brassica rapa Bra003702 I 0.838
Bo8g027460 Brassica oleracea Bo8g027460 I 0.873
Bo6g120870 Brassica oleracea Bo6g120870 I 0.878
Bo6g083690 Brassica oleracea Bo6g083690 I 0.878
Bo6g049430 Brassica oleracea Bo6g049430 I 0.917
Bo2g091240 Brassica oleracea Bo2g091240 I 0.856
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.942
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.954
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.931
Bra003703 Brassica rapa Bra003703 I 0.877
Bra008285 Brassica rapa Bra008285 I 0.866
Bra015716 Brassica rapa Bra015716 I 0.878
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.857
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.885
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.914
F775_26337 Aegilops tauschii F775_26337 I 0.951
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.956
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.939
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.913
Bra040010 Brassica rapa Bra040010 I 0.917
Bra036731 Brassica rapa Bra036731 I 0.873
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.948
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.919
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.884
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.881
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.884
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.959
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.889
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.874
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.942
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.954
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.951
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.891
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.960
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.901
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.890
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.890
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.919
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.878
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.896
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.929
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.865
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.895
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.959
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.947
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.931
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.947
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.951
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.942
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.952
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.942
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.954
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.947
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.931
OBART04G20290 Oryza barthii OBART04G20290 I 0.954
OB04G27270 Oryza brachyantha OB04G27270 I 0.956
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.954
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.941
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.924
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.942
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.956
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.931
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.942
OB02G33250 Oryza brachyantha OB02G33250 I 0.933
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.931
OBART02G25970 Oryza barthii OBART02G25970 I 0.924
mgf018892m Mimulus guttatus mgf018892m N 0.897
mgf015314m Mimulus guttatus mgf015314m N 0.852
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.814
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.814
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.814
F775_24861 Aegilops tauschii F775_24861 N 0.860
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.817