29739.m003611 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29739.m003611 T250442_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.944 0.758
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.944 0.758
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.873 0.652
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29739.m003611 MADF 434 502

Links

Other MADF family TFs
Other Ricinus communis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.955
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.954
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.954
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.949
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.949
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.949
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.949
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.949
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.948
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.944
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.944
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.944
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.944
OBART02G00380 Oryza barthii OBART02G00380 I 0.944
OS02G0104500 Oryza sativa OS02G0104500 D 0.944
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.944
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.944
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.944
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.944
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.944
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.944
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.944
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.943
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.941
OB02G10400 Oryza brachyantha OB02G10400 I 0.940
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.940
Si033157m.g Setaria italica Si033157m.g I 0.939
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.936
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.930
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.930
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.930
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.930
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.928
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.923
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.922
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.920
TCM_037381 Theobroma cacao TCM_037381 I 0.914
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.903
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.897
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.895
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.894
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.887
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.887
MDP0000122269 Malus domestica MDP0000122269 I 0.887
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.886
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.886
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.885
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.885
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.882
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.876
PK15172.1 Cannabis sativa PK15172.1 D 0.873
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.873
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.867
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.867
Bo6g083670 Brassica oleracea Bo6g083670 I 0.867
PK14727.1 Cannabis sativa PK14727.1 I 0.866
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.863
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.851
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.850
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.842
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.842
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.835
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.830
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.829
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.829
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.826
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.822
Traes_1DL_9EFDBD741 Triticum aestivum Traes_1DL_9EFDBD741 I 0.816