29815.m000504 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29815.m000504 T250444_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G10030
M01258_2.00
Arabidopsis thaliana
NRMCGTTAWNN

NNWTAACGKYN
PBM
Lambert et al.(2019)
pTH11538
0.957 0.840
AT3G10030
M06971_2.00
Arabidopsis thaliana
HRHCKCCGTTANND

HNNTAACGGMGDYD
Dap-seq
OMalley et al.(2016)
AT3G10030_col_a
0.957 0.840
AT3G10030
M06972_2.00
Arabidopsis thaliana
HWRHMKCCGTTAAHD

HDTTAACGGMKDYWD
Dap-seq
OMalley et al.(2016)
AT3G10030_colamp_a
0.957 0.840
PK04914.1
M01262_2.00
Cannabis sativa
DCCGTYAN

NTRACGGH
PBM
Lambert et al.(2019)
pTH10098
0.955 0.827
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29815.m000504 MADF 174 256

Links

Other MADF family TFs
Other Ricinus communis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK04914.1 Cannabis sativa PK04914.1 D 0.955
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.957
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.948
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.903
mgf008067m Mimulus guttatus mgf008067m I 0.917
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.959
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.967
28077.m000081 Ricinus communis 28077.m000081 I 0.881
Pm026265 Prunus mume Pm026265 I 0.956
Cla018015 Citrullus lanatus Cla018015 I 0.959
Ca_20148 Cicer arietinum Ca_20148 I 0.951
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.924
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.957
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.829
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.829
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.829
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.957
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.950
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.950
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.950
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.865
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.865
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.933
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.817
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.829
MDP0000415733 Malus domestica MDP0000415733 I 0.903
MDP0000399495 Malus domestica MDP0000399495 I 0.903
MDP0000201016 Malus domestica MDP0000201016 I 0.903
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.950
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.941
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.912
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.955
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.962
TCM_043551 Theobroma cacao TCM_043551 I 0.880
TCM_022397 Theobroma cacao TCM_022397 I 0.940
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.956
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.851
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.891
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.917
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.830
GLYMA20G33031 Glycine max GLYMA20G33031 I 0.820
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.951
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.909
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.951
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.956
F775_31501 Aegilops tauschii F775_31501 I 0.829
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.829
Bra029812 Brassica rapa Bra029812 I 0.948
Bo5g137800 Brassica oleracea Bo5g137800 I 0.948
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.853
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.841
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.951
OB04G18670 Oryza brachyantha OB04G18670 I 0.853
Si009787m.g Setaria italica Si009787m.g I 0.826
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.893
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.893
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.827
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.911
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.956
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.866
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.871
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I 0.933
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.952
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.853
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.853
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.853
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.829
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.886