cassava11841.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava11841.valid.m1 T250454_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.971 0.986
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.968 0.795
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.963 0.836
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.956 0.945
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.954 0.945
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.950 0.781
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.947 0.644
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.939 0.562
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.933 0.562
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.933 0.562
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.933 0.562
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.929 0.781
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.929 0.781
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.929 0.781
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.900 0.589
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.866 0.411
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava11841.valid.m1 MADF 97 182

Links

Other MADF family TFs
Other Manihot esculenta TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_11371 Aegilops tauschii F775_11371 I 0.000
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.000
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.000
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.000
scaffold_702851.1 Arabidopsis lyrata scaffold_702851.1 I 0.000
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.000
BHLH3 Arabidopsis thaliana AT4G16430 I 0.000
BHLH25 Arabidopsis thaliana AT4G37850 I 0.000
Bostr.30275s0092 Boechera stricta Bostr.30275s0092 I 0.000
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.000
Bo7g104400 Brassica oleracea Bo7g104400 I 0.000
Bo1g003350 Brassica oleracea Bo1g003350 I 0.000
Bo1g054800 Brassica oleracea Bo1g054800 I 0.000
Bo4g150960 Brassica oleracea Bo4g150960 I 0.000
Bo3g153150 Brassica oleracea Bo3g153150 I 0.000
Bra039924 Brassica rapa Bra039924 I 0.000
Bra038458 Brassica rapa Bra038458 I 0.000
Bra030210 Brassica rapa Bra030210 I 0.000
Bra011790 Brassica rapa Bra011790 I 0.000
Bra010617 Brassica rapa Bra010617 I 0.000
Bra013128 Brassica rapa Bra013128 I 0.000
PK09122.1 Cannabis sativa PK09122.1 I 0.000
PK11573.1 Cannabis sativa PK11573.1 I 0.000
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.000
Cagra.3528s0002 Capsella grandiflora Cagra.3528s0002 I 0.000
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.000
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.000
Carubv10007725m.g Capsella rubella Carubv10007725m.g I 0.000
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.000
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.000
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.000
Ca_02264 Cicer arietinum Ca_02264 I 0.000
Ca_02263 Cicer arietinum Ca_02263 I 0.000
Ca_00186 Cicer arietinum Ca_00186 I 0.000
Cla014288 Citrullus lanatus Cla014288 I 0.000
Cla000123 Citrullus lanatus Cla000123 I 0.000
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.000
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.000
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.000
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.000
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.000
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.000
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.000
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.000
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.000
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.000
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.000
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.000
Thhalv10025122m.g Eutrema salsugineum Thhalv10025122m.g I 0.000
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.000
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.000
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.000
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.000
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.000
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.000
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.000
GLYMA13G32650 Glycine max GLYMA13G32650 I 0.000
GLYMA15G06680 Glycine max GLYMA15G06680 I 0.000
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.000
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.000
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.000
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.000
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.000
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.000
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.000
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.000
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.000
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.000
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.000
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.000
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.000
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.000
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.000
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.000
LjSGA_136560.1 Lotus japonicus LjSGA_136560.1 I 0.000
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.000
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.000
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.000
MDP0000318216 Malus domestica MDP0000318216 I 0.000
MDP0000174149 Malus domestica MDP0000174149 I 0.000
MDP0000159571 Malus domestica MDP0000159571 I 0.000
MDP0000170202 Malus domestica MDP0000170202 I 0.000
MDP0000502440 Malus domestica MDP0000502440 I 0.000
MDP0000291132 Malus domestica MDP0000291132 I 0.000
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.000
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.000
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.000
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.000
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.000
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.000
MTR_2g010450 Medicago truncatula MTR_2g010450 N 0.000
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.000
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.000
OBART03G32580 Oryza barthii OBART03G32580 I 0.000
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.000
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.000
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.000
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.000
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.000
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.000
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.000
OS03G0725800 Oryza sativa OS03G0725800 I 0.000
OS03G0671800 Oryza sativa OS03G0671800 I 0.000
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.000
Pavir.Ia03339 Panicum virgatum Pavir.Ia03339 I 0.000
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.000
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.000
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.000
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.000
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.000
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.000
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.000
Pm002304 Prunus mume Pm002304 I 0.000
Pm021008 Prunus mume Pm021008 I 0.000
Pm002305 Prunus mume Pm002305 I 0.000
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.000
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.000
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.000
28179.m000478 Ricinus communis 28179.m000478 I 0.000
29804.m001498 Ricinus communis 29804.m001498 I 0.000
28179.m000479 Ricinus communis 28179.m000479 I 0.000
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.000
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.000
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.000
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.000
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.000
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.000
Si036393m.g Setaria italica Si036393m.g I 0.000
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.000
Solyc05g050560.1 Solanum lycopersicum Solyc05g050560.1 I 0.000
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.000
PGSC0003DMG400007010 Solanum tuberosum PGSC0003DMG400007010 I 0.000
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.000
TCM_000894 Theobroma cacao TCM_000894 I 0.000
TCM_000895 Theobroma cacao TCM_000895 I 0.000
TCM_006357 Theobroma cacao TCM_006357 I 0.000
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.000
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.000
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.000
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.000
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.000
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.000
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.000
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.000
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.000
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.000