cassava25125.valid.m1 (Manihot esculenta)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 cassava25125.valid.m1 T250468_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS02G0104500
M02271_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH8719
0.931 0.746
OS02G0104500
M02272_2.00
Oryza sativa
NDGTAAWWHN

NDWWTTACHN
PBM
Weirauch et al.(2014)
pTH9273
0.931 0.746
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN

NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.878 0.657
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava25125.valid.m1 MADF 445 514

Links

Other MADF family TFs
Other Manihot esculenta TFs

73 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK15172.1 Cannabis sativa PK15172.1 D 0.878
OS02G0104500 Oryza sativa OS02G0104500 D 0.931
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.856
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.941
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.880
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.923
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.898
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.962
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.898
29739.m003611 Ricinus communis 29739.m003611 I 0.955
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.954
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.914
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.885
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.914
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.846
Traes_1DL_9EFDBD741 Triticum aestivum Traes_1DL_9EFDBD741 I 0.824
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.898
Gorai.001G020300 Gossypium raimondii Gorai.001G020300 I 0.899
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.931
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.864
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.837
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.831
PK14727.1 Cannabis sativa PK14727.1 I 0.879
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.956
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.868
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.951
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.841
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.831
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.906
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.855
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.939
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.939
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.962
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.867
MDP0000122269 Malus domestica MDP0000122269 I 0.898
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.897
TCM_037381 Theobroma cacao TCM_037381 I 0.924
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.843
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.845
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.906
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.885
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.897
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.931
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.939
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.950
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.924
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.931
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.939
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.914
Bo6g083670 Brassica oleracea Bo6g083670 I 0.888
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.880
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.931
OB02G10400 Oryza brachyantha OB02G10400 I 0.939
OBART02G00380 Oryza barthii OBART02G00380 I 0.931
OBART10G15720 Oryza barthii OBART10G15720 I 0.816
Si033157m.g Setaria italica Si033157m.g I 0.934
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.835
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.835
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.939
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.951
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.950
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.951
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.956
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.931
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.907
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.931
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.931
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.931
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.931
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.931
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.846
MDP0000287231 Malus domestica MDP0000287231 N 0.824
MDP0000284819 Malus domestica MDP0000284819 N 0.812