Cucsa.394820 (Cucumis sativus)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cucsa.394820 T250491_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.967 0.867
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.964 0.747
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.961 0.573
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.960 0.573
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.960 0.573
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.960 0.573
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.958 0.667
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.958 0.667
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.958 0.667
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.949 0.720
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.947 0.680
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.945 0.747
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.934 0.493
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.921 0.693
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.910 0.520
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.864 0.387
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.394820.1 MADF 81 158
Cucsa.394820.2 MADF 81 158

Links

Other MADF family TFs
Other Cucumis sativus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.959
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.925
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.938
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.913
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.947
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.961
GT-1 Arabidopsis thaliana AT1G13450 D 0.960
GT-4 Arabidopsis thaliana AT3G25990 D 0.958
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.953
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.923
Bo8g107400 Brassica oleracea Bo8g107400 I 0.933
Bo5g017510 Brassica oleracea Bo5g017510 I 0.947
Bo2g138840 Brassica oleracea Bo2g138840 I 0.920
Bra036354 Brassica rapa Bra036354 I 0.918
Bra026903 Brassica rapa Bra026903 I 0.956
Bra019721 Brassica rapa Bra019721 I 0.947
PK20543.1 Cannabis sativa PK20543.1 D 0.910
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.908
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.956
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.956
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.908
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.938
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.945
Ca_11315 Cicer arietinum Ca_11315 I 0.945
Cla023054 Citrullus lanatus Cla023054 I 0.968
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.937
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.937
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.917
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.948
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.956
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.931
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.949
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.949
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.949
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.926
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.931
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.936
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.934
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.967
MDP0000164819 Malus domestica MDP0000164819 D 0.964
MDP0000275412 Malus domestica MDP0000275412 I 0.870
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.945
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.945
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.967
mgf016368m Mimulus guttatus mgf016368m I 0.892
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.933
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.923
OB04G23970 Oryza brachyantha OB04G23970 I 0.924
OS04G0486400 Oryza sativa OS04G0486400 D 0.934
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.898
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.937
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.933
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.945
Pm006885 Prunus mume Pm006885 I 0.964
Pm016214 Prunus mume Pm016214 I 0.875
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.875
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.955
29929.m004704 Ricinus communis 29929.m004704 D 0.921
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.934
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.938
Si036121m.g Setaria italica Si036121m.g I 0.932
Si010147m.g Setaria italica Si010147m.g I 0.933
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.914
TCM_010751 Theobroma cacao TCM_010751 I 0.926
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.864
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.927
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.949
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.933