CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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e_gw1.85.39.1
(
Physcomitrella patens
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
e_gw1.85.39.1
T250493_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.888
0.746
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.888
0.746
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.85.39.1
MADF
68
139
SDMDANFRDSGLKGPLWEDVSKKLAELGYSRSAKKCKEKFENVHKYYKKTKDGRAGRQDGKSYRFFSQLEAL
e_gw1.85.39.1
MADF
395
466
DMETRFQEAGPKGPLWEEISQGMACLGYNRNQKRCKEKWENINKYFRKTKESNKKRPENAKTCPYFHQLEVL
Links
Other
MADF
family TFs
Other
Physcomitrella patens
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy