CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0562s0030
(
Capsella grandiflora
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Cagra.0562s0030
T250602_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0562s0030.1.p
MADF
47
123
LLEAYESKWVLRNRAKLKGQDWEDVARHVSSRATHTKSPKTQTQCKNKIESMKKRYRSESATADGSSWPLYPRLDHL
Links
Other
MADF
family TFs
Other
Capsella grandiflora
TFs
25 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10019255m.g
Capsella rubella
Carubv10019255m.g
N
0.971
Bostr.0697s0050
Boechera stricta
Bostr.0697s0050
N
0.970
fgenesh2_kg.5__1832__AT3G54390.1
Arabidopsis lyrata
fgenesh2_kg.5__1832__AT3G54390.1
N
0.970
Bra007069
Brassica rapa
Bra007069
N
0.968
SapurV1A.0574s0200
Salix purpurea
SapurV1A.0574s0200
N
0.964
PRUPE_ppa007968mg
Prunus persica
PRUPE_ppa007968mg
N
0.964
POPTR_0001s06580
Populus trichocarpa
POPTR_0001s06580
N
0.964
AT3G54390
Arabidopsis thaliana
AT3G54390
N
0.962
cassava22232.valid.m1
Manihot esculenta
cassava22232.valid.m1
N
0.960
Bo8g083630
Brassica oleracea
Bo8g083630
N
0.958
GLYMA13G26550
Glycine max
GLYMA13G26550
N
0.955
Bo8g068640
Brassica oleracea
Bo8g068640
N
0.953
Pm016744
Prunus mume
Pm016744
N
0.952
SapurV1A.0009s1160
Salix purpurea
SapurV1A.0009s1160
N
0.951
VIT_13s0084g00800
Vitis vinifera
VIT_13s0084g00800
N
0.951
POPTR_0003s19470
Populus trichocarpa
POPTR_0003s19470
N
0.951
Cla010096
Citrullus lanatus
Cla010096
N
0.944
Solyc01g096470.2
Solanum lycopersicum
Solyc01g096470.2
N
0.942
LjSGA_030847.2
Lotus japonicus
LjSGA_030847.2
N
0.941
MDP0000727700
Malus domestica
MDP0000727700
N
0.938
MDP0000123719
Malus domestica
MDP0000123719
N
0.938
GLYMA11G25570
Glycine max
GLYMA11G25570
N
0.935
Aquca_004_00804
Aquilegia coerulea
Aquca_004_00804
N
0.918
Ciclev10001759m.g
Citrus clementina
Ciclev10001759m.g
N
0.912
GLYMA15G37451
Glycine max
GLYMA15G37451
N
0.909