CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.20992s0001
(
Capsella grandiflora
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Cagra.20992s0001
T250608_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.869
0.672
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.869
0.672
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.20992s0001.1.p
MADF
59
129
SEMGKAFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKEGRTGKSEGKTYRFFEELEA
Cagra.20992s0001.1.p
MADF
412
484
KNLEANYQENGTKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKRPLDSKTCPYFHQLEAL
Links
Other
MADF
family TFs
Other
Capsella grandiflora
TFs
191 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy