Cagra.6197s0012 (Capsella grandiflora)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Cagra.6197s0012 T250617_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.943 0.765
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.941 0.721
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.940 0.574
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.934 0.706
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.921 0.676
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.909 0.632
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.909 0.632
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.909 0.632
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.909 0.618
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.908 0.529
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.903 0.721
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.903 0.721
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.903 0.721
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.900 0.676
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.897 0.632
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.838 0.412
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6197s0012.1.p MADF 64 134

Links

Other MADF family TFs
Other Capsella grandiflora TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.971
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.952
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.951
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.950
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.947
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.946
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.943
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.942
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.942
TCM_010751 Theobroma cacao TCM_010751 I 0.942
PK20543.1 Cannabis sativa PK20543.1 D 0.941
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.940
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.940
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.940
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.940
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.939
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.938
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.934
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.934
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.934
Ca_11315 Cicer arietinum Ca_11315 I 0.934
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.931
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.929
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.928
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.927
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.926
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.926
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.926
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.922
29929.m004704 Ricinus communis 29929.m004704 D 0.921
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.918
Pm016214 Prunus mume Pm016214 I 0.917
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.917
Bra019721 Brassica rapa Bra019721 I 0.916
Bo5g017510 Brassica oleracea Bo5g017510 I 0.916
Bra036354 Brassica rapa Bra036354 I 0.915
Bo2g138840 Brassica oleracea Bo2g138840 I 0.915
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.915
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.914
MDP0000275412 Malus domestica MDP0000275412 I 0.913
GT-1 Arabidopsis thaliana AT1G13450 D 0.909
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.909
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.908
Cla023054 Citrullus lanatus Cla023054 I 0.908
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.908
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.908
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.905
OB04G23970 Oryza brachyantha OB04G23970 I 0.904
GT-4 Arabidopsis thaliana AT3G25990 D 0.903
Bra026903 Brassica rapa Bra026903 I 0.902
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.902
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.902
Bo8g107400 Brassica oleracea Bo8g107400 I 0.902
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.901
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.901
MDP0000164819 Malus domestica MDP0000164819 D 0.900
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.900
Pm006885 Prunus mume Pm006885 I 0.900
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.899
Si010147m.g Setaria italica Si010147m.g I 0.899
Si036121m.g Setaria italica Si036121m.g I 0.898
OS04G0486400 Oryza sativa OS04G0486400 D 0.897
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.897
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.895
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.895
mgf016368m Mimulus guttatus mgf016368m I 0.890
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.887
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.838