Carubv10001830m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10001830m.g T250618_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G05550
M06978_2.00
Arabidopsis thaliana
HNDYCGCCGGMRWND

HNWYKCCGGCGRHND
Dap-seq
OMalley et al.(2016)
AT5G05550_col_a
0.875 0.806
AT5G05550
M06979_2.00
Arabidopsis thaliana
HYNYCGCCGGARWHD

HDWYTCCGGCGRNRD
Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a
0.875 0.806
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001830m MADF 33 107

Links

Other MADF family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AC194965.4_FG004 Zea mays AC194965.4_FG004 N 0.000
Si011269m.g Setaria italica Si011269m.g N 0.000
Sb09g004315 Sorghum bicolor Sb09g004315 N 0.000
OS05G0155400 Oryza sativa OS05G0155400 N 0.000
ORGLA05G0036200 Oryza glaberrima ORGLA05G0036200 N 0.000
OPUNC05G03600 Oryza punctata OPUNC05G03600 N 0.000
OLONG_020882 Oryza longistaminata OLONG_020882 N 0.000
OBART05G03900 Oryza barthii OBART05G03900 N 0.000
OB05G13650 Oryza brachyantha OB05G13650 N 0.000
BRADI2G12590 Brachypodium distachyon BRADI2G12590 N 0.000
BGIOSGA018779 Oryza indica BGIOSGA018779 N 0.000
Pavir.J31164 Panicum virgatum Pavir.J31164 N 0.000