Carubv10027995m.g (Capsella rubella)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Carubv10027995m.g T250635_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G47660
M02266_2.00
Arabidopsis thaliana
RCGGTAAW

WTTACCGY
PBM
Weirauch et al.(2014)
pTH7911
0.944 0.652
AT5G47660
M06980_2.00
Arabidopsis thaliana
RCRGTWAAAAHDDHW

WDHHDTTTTWACYGY
Dap-seq
OMalley et al.(2016)
AT5G47660_col_a
0.944 0.652
AT5G47660
M06981_2.00
Arabidopsis thaliana
WHHHHRCRGTWAAWW

WWTTWACYGYDDDDW
Dap-seq
OMalley et al.(2016)
AT5G47660_colamp_a
0.944 0.652
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10027995m MADF 306 377

Links

Other MADF family TFs
Other Capsella rubella TFs

Invalid Input OrderBy

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action