Eucgr.B03456 (Eucalyptus grandis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Eucgr.B03456 T250658_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.969 0.743
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.966 0.716
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.963 0.757
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.952 0.716
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.948 0.703
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.945 0.514
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.943 0.757
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.943 0.541
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.943 0.541
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.943 0.541
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.937 0.514
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.934 0.662
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.934 0.662
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.934 0.662
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.897 0.486
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.866 0.405
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.B03456.1 MADF 109 194

Links

Other MADF family TFs
Other Eucalyptus grandis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.969
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.967
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.966
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.966
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.966
Ca_11315 Cicer arietinum Ca_11315 I 0.963
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.963
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.963
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.963
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.959
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.958
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.958
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.958
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.956
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.956
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.955
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.953
29929.m004704 Ricinus communis 29929.m004704 D 0.952
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.951
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.950
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.950
TCM_010751 Theobroma cacao TCM_010751 I 0.950
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.950
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.950
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.948
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.948
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.948
Cla023054 Citrullus lanatus Cla023054 I 0.948
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.948
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.948
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.947
PK20543.1 Cannabis sativa PK20543.1 D 0.945
MDP0000164819 Malus domestica MDP0000164819 D 0.943
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.943
Pm006885 Prunus mume Pm006885 I 0.943
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.943
GT-1 Arabidopsis thaliana AT1G13450 D 0.943
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.938
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.938
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.937
GT-4 Arabidopsis thaliana AT3G25990 D 0.934
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.932
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.932
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.931
Bo8g107400 Brassica oleracea Bo8g107400 I 0.931
Bra026903 Brassica rapa Bra026903 I 0.931
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.930
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.926
Bra036354 Brassica rapa Bra036354 I 0.925
Bo2g138840 Brassica oleracea Bo2g138840 I 0.925
Bo5g017510 Brassica oleracea Bo5g017510 I 0.920
Bra019721 Brassica rapa Bra019721 I 0.920
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.915
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.915
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.915
Pm016214 Prunus mume Pm016214 I 0.915
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.913
MDP0000275412 Malus domestica MDP0000275412 I 0.911
Si010147m.g Setaria italica Si010147m.g I 0.906
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.905
Si036121m.g Setaria italica Si036121m.g I 0.898
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.897
OS04G0486400 Oryza sativa OS04G0486400 D 0.897
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.897
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.893
mgf016368m Mimulus guttatus mgf016368m I 0.888
OB04G23970 Oryza brachyantha OB04G23970 I 0.883
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.866