Eucgr.J02286 (Eucalyptus grandis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Eucgr.J02286 T250661_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.938 0.786
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.926 0.600
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.926 0.571
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.926 0.629
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.924 0.671
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.920 0.643
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.920 0.643
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.920 0.643
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.919 0.671
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.919 0.657
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.915 0.614
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.907 0.586
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.907 0.586
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.907 0.586
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.901 0.643
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.852 0.443
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.J02286.1 MADF 91 169

Links

Other MADF family TFs
Other Eucalyptus grandis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.919
29929.m004704 Ricinus communis 29929.m004704 D 0.901
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.852
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.926
OS04G0486400 Oryza sativa OS04G0486400 D 0.924
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.926
MDP0000164819 Malus domestica MDP0000164819 D 0.919
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.926
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.915
GT-4 Arabidopsis thaliana AT3G25990 D 0.907
PK20543.1 Cannabis sativa PK20543.1 D 0.938
GT-1 Arabidopsis thaliana AT1G13450 D 0.920
mgf016368m Mimulus guttatus mgf016368m I 0.932
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.918
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.919
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.918
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.917
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.919
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.920
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.926
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.930
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.891
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.910
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.908
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.950
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.915
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.927
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.904
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.908
MDP0000275412 Malus domestica MDP0000275412 I 0.917
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.909
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.895
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.899
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.920
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.928
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.926
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.918
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.929
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.930
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.919
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.919
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.897
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.945
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.924
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.926
Bra036354 Brassica rapa Bra036354 I 0.894
Bra026903 Brassica rapa Bra026903 I 0.920
Bra019721 Brassica rapa Bra019721 I 0.904
Bo8g107400 Brassica oleracea Bo8g107400 I 0.920
Bo5g017510 Brassica oleracea Bo5g017510 I 0.904
Bo2g138840 Brassica oleracea Bo2g138840 I 0.892
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.919
OB04G23970 Oryza brachyantha OB04G23970 I 0.920
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.920
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.919
Pm016214 Prunus mume Pm016214 I 0.920
Pm006885 Prunus mume Pm006885 I 0.919
Cla023054 Citrullus lanatus Cla023054 I 0.925
Ca_11315 Cicer arietinum Ca_11315 I 0.919
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.939
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.925
TCM_010751 Theobroma cacao TCM_010751 I 0.928
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.956
Si036121m.g Setaria italica Si036121m.g I 0.923
Si010147m.g Setaria italica Si010147m.g I 0.916
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.945
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.920
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.913