evm.TU.supercontig_130.35 (Carica papaya)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 evm.TU.supercontig_130.35 T250667_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.959 0.644
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.956 0.658
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.956 0.658
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.956 0.658
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.951 0.575
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.951 0.658
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.950 0.658
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.938 0.603
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.938 0.603
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.938 0.603
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.926 0.562
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.924 0.630
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.920 0.740
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.914 0.616
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.894 0.589
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.861 0.411
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_130.35 MADF 82 159

Links

Other MADF family TFs
Other Carica papaya TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action