evm.TU.supercontig_19.152 (Carica papaya)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 evm.TU.supercontig_19.152 T250670_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G05550
M06978_2.00
Arabidopsis thaliana
HNDYCGCCGGMRWND

HNWYKCCGGCGRHND
Dap-seq
OMalley et al.(2016)
AT5G05550_col_a
0.845 0.706
AT5G05550
M06979_2.00
Arabidopsis thaliana
HYNYCGCCGGARWHD

HDWYTCCGGCGRNRD
Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a
0.845 0.706
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_19.152 MADF 32 107

Links

Other MADF family TFs
Other Carica papaya TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.845
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.905
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.905
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.856
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.855
mgf006505m Mimulus guttatus mgf006505m I 0.882
mgf000047m Mimulus guttatus mgf000047m I 0.862
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.823
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.843
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.860
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.843
29814.m000741 Ricinus communis 29814.m000741 I 0.938
29727.m000472 Ricinus communis 29727.m000472 I 0.843
Pm013209 Prunus mume Pm013209 I 0.897
Cla015773 Citrullus lanatus Cla015773 I 0.823
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.849
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.901
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.938
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.879
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.928
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.859
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.836
MDP0000281471 Malus domestica MDP0000281471 I 0.896
MDP0000255104 Malus domestica MDP0000255104 I 0.896
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.860
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.860
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.822
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.896
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.928
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.859
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.935
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.855
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.817
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.939
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.838
Bra009119 Brassica rapa Bra009119 I 0.832
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.821
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.927
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.857
Bra034165 Brassica rapa Bra034165 I 0.918
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.819
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.846
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.826
Bra034866 Brassica rapa Bra034866 I 0.894
Bo9g177060 Brassica oleracea Bo9g177060 I 0.856
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.887
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.929
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.893
TCM_029209 Theobroma cacao TCM_029209 I 0.843
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.939
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.836
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.838
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.905
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.905
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.897
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.912
Bo5g136850 Brassica oleracea Bo5g136850 I 0.905
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.832
PK20477.1 Cannabis sativa PK20477.1 N 0.839
PK22475.1 Cannabis sativa PK22475.1 N 0.841
MDP0000097759 Malus domestica MDP0000097759 N 0.952
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.817
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.916
TCM_042467 Theobroma cacao TCM_042467 N 0.920
Si010246m.g Setaria italica Si010246m.g N 0.830
mgf001239m Mimulus guttatus mgf001239m N 0.840
Aquca_039_00151 Aquilegia coerulea Aquca_039_00151 N 0.855
Traes_6AL_7A4395C60 Triticum aestivum Traes_6AL_7A4395C60 N 0.819
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.930
MDP0000943251 Malus domestica MDP0000943251 N 0.946