evm.TU.supercontig_209.41 (Carica papaya)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 evm.TU.supercontig_209.41 T250671_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.899 0.667
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.899 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_209.41 MADF 28 112

Links

Other MADF family TFs
Other Carica papaya TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.942
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.931
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.930
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.924
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.923
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.923
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.922
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.921
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.918
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.918
Ca_19877 Cicer arietinum Ca_19877 I 0.911
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.905
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.902
29900.m001628 Ricinus communis 29900.m001628 I 0.902
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.901
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.901
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.900
Bo6g075950 Brassica oleracea Bo6g075950 I 0.899
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.899
Bra003346 Brassica rapa Bra003346 I 0.899
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.898
TCM_029695 Theobroma cacao TCM_029695 I 0.896
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.896
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.896
Ca_00394 Cicer arietinum Ca_00394 I 0.896
Gorai.011G039600 Gossypium raimondii Gorai.011G039600 I 0.895
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.894
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.891
MDP0000301451 Malus domestica MDP0000301451 I 0.888
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.888
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.888
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.888
Cla009854 Citrullus lanatus Cla009854 I 0.888
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.888
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.887
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.878
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.877
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.873
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.872
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.872
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.872
OBART05G25610 Oryza barthii OBART05G25610 I 0.872
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.872
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.872
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.872
OS05G0560600 Oryza sativa OS05G0560600 I 0.872
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.872
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.871
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.871
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.871
Si022565m.g Setaria italica Si022565m.g I 0.871
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.871
BRADI2G16780 Brachypodium distachyon BRADI2G16780 I 0.870
PK27986.1 Cannabis sativa PK27986.1 I 0.869
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.867
Cla002288 Citrullus lanatus Cla002288 I 0.863
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.863
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.859
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.858
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.857
Bra007407 Brassica rapa Bra007407 I 0.854
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.845
mgf001239m Mimulus guttatus mgf001239m N 0.845
Cucsa.195790 Cucumis sativus Cucsa.195790 N 0.832
Cla019967 Citrullus lanatus Cla019967 I 0.826
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.826
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.826
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.823
Ca_02494 Cicer arietinum Ca_02494 N 0.822
mgf000047m Mimulus guttatus mgf000047m I 0.820
GRMZM2G023119 Zea mays GRMZM2G023119 N 0.816
BGIOSGA001035 Oryza indica BGIOSGA001035 N 0.816
ONIVA01G29560 Oryza nivara ONIVA01G29560 N 0.816
OPUNC01G26130 Oryza punctata OPUNC01G26130 N 0.816
ORGLA01G0214300 Oryza glaberrima ORGLA01G0214300 N 0.816
OGLUM01G30050 Oryza glumaepatula OGLUM01G30050 N 0.816
OMERI01G23900 Oryza meridionalis OMERI01G23900 N 0.816
LPERR01G22430 Leersia perrieri LPERR01G22430 N 0.816
TRAES3BF009800030CFD_g Triticum aestivum TRAES3BF009800030CFD_g N 0.816
BRADI2G46320 Brachypodium distachyon BRADI2G46320 N 0.816
OS01G0674000 Oryza sativa OS01G0674000 N 0.816