Gorai.002G231500 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.002G231500 T250701_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.869 0.703
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.869 0.703
AT1G76880
M06970_2.00
Arabidopsis thaliana
RHRGTAAAAWNDDDWW

WWHHHNWTTTTACYDY
Dap-seq
OMalley et al.(2016)
AT1G76880_col_a
0.836 0.681
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G231500.1 MADF 73 143
Gorai.002G231500.1 MADF 330 402

Links

Other MADF family TFs
Other Gossypium raimondii TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_035565 Theobroma cacao TCM_035565 I 0.961
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.958
PK24122.1 Cannabis sativa PK24122.1 I 0.957
Ca_04386 Cicer arietinum Ca_04386 I 0.956
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.953
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.953
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.952
29576.m000223 Ricinus communis 29576.m000223 I 0.951
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.951
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.951
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.951
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.950
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.949
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.949
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.947
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.947
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.946
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.946
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.946
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.946
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.945
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.945
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.944
TCM_035571 Theobroma cacao TCM_035571 I 0.944
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.944
MDP0000156139 Malus domestica MDP0000156139 I 0.944
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.944
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.943
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.942
MDP0000451107 Malus domestica MDP0000451107 I 0.942
Ca_25135 Cicer arietinum Ca_25135 I 0.942
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.940
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.940
Bo6g083690 Brassica oleracea Bo6g083690 I 0.940
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.940
Bra003703 Brassica rapa Bra003703 I 0.940
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.940
mgf021983m Mimulus guttatus mgf021983m I 0.940
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.940
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.940
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.939
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.939
Cla001992 Citrullus lanatus Cla001992 I 0.939
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.939
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.938
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.936
Pm022572 Prunus mume Pm022572 I 0.936
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.935
Cla007910 Citrullus lanatus Cla007910 I 0.935
Bra015716 Brassica rapa Bra015716 I 0.934
Bra008285 Brassica rapa Bra008285 I 0.934
Bo6g120870 Brassica oleracea Bo6g120870 I 0.934
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.933
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.933
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.933
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.932
mgf018892m Mimulus guttatus mgf018892m N 0.930
PK26613.1 Cannabis sativa PK26613.1 I 0.930
Ca_04385 Cicer arietinum Ca_04385 I 0.929
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.929
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.919
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.915
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.915
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.915
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.915
Pm022570 Prunus mume Pm022570 I 0.912
Bo8g027460 Brassica oleracea Bo8g027460 I 0.911
30206.m000769 Ricinus communis 30206.m000769 I 0.911
Bra036731 Brassica rapa Bra036731 I 0.911
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.910
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.910
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.909
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.909
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.908
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.908
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.907
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.907
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.907
OBART04G20290 Oryza barthii OBART04G20290 I 0.907
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.907
TCM_001348 Theobroma cacao TCM_001348 I 0.906
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.904
Bra003702 Brassica rapa Bra003702 I 0.904
OB04G27270 Oryza brachyantha OB04G27270 I 0.903
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.903
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.903
Bo2g091240 Brassica oleracea Bo2g091240 I 0.901
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.900
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.900
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.900
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.898
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.898
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.898
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.898
TCM_015563 Theobroma cacao TCM_015563 I 0.897
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.896
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.896
mgf015314m Mimulus guttatus mgf015314m N 0.896
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.895
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.895
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.895
Si012121m.g Setaria italica Si012121m.g I 0.894
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.894
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.893
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.893
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.893
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.893
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.893
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.892
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.892
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.892
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.892
F775_26337 Aegilops tauschii F775_26337 I 0.890
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.890
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.889
30068.m002635 Ricinus communis 30068.m002635 I 0.888
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.888
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.888
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.888
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.887
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.887
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.887
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.887
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.887
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.886
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.885
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.885
Cla005046 Citrullus lanatus Cla005046 I 0.885
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.885
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.884
Si034382m.g Setaria italica Si034382m.g I 0.884
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.884
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.884
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.884
Pm024289 Prunus mume Pm024289 I 0.884
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.883
mgf004276m Mimulus guttatus mgf004276m I 0.882
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.881
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.881
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.881
MDP0000451038 Malus domestica MDP0000451038 I 0.881
MDP0000701272 Malus domestica MDP0000701272 I 0.880
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.879
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.878
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.877
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.877
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.877
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.876
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.876
OB02G33250 Oryza brachyantha OB02G33250 I 0.876
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.874
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.874
Bo6g049430 Brassica oleracea Bo6g049430 I 0.874
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.874
Bra040010 Brassica rapa Bra040010 I 0.874
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.873
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.871
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.871
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.871
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.871
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.871
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.869
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.869
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.868
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.866
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.866
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.866
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.865
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.863
OBART02G25970 Oryza barthii OBART02G25970 I 0.861
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.861
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.860
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.858
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.858
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.857
Si016578m.g Setaria italica Si016578m.g I 0.857
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.854
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.853
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.850
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.847
F775_24861 Aegilops tauschii F775_24861 N 0.847
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.846
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.842
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.842
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.839
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.838
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.837
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.836
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.836
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.836
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.829
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.826
Pm001889 Prunus mume Pm001889 I 0.813