Gorai.008G163200 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.008G163200 T250711_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN

NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.971 0.973
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN

NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.971 0.946
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN

NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.963 0.836
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN

NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
0.956 0.959
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN

NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.956 0.784
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN

NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.954 0.904
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.947 0.658
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC

GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.944 0.581
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM

KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.933 0.562
GT-1
M10896_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.933 0.562
GT-1
M10897_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.933 0.562
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN

NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.929 0.781
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH

DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.929 0.781
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH

DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.929 0.781
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN

NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.900 0.589
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV

BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.866 0.411
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G163200.1 MADF 80 165
Gorai.008G163200.2 MADF 80 165
Gorai.008G163200.3 MADF 80 166
Gorai.008G163200.4 MADF 80 156

Links

Other MADF family TFs
Other Gossypium raimondii TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.971
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.971
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.971
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.970
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.970
Ca_11315 Cicer arietinum Ca_11315 I 0.968
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.967
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.967
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.966
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.966
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.966
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.964
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.964
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.963
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.962
TCM_010751 Theobroma cacao TCM_010751 I 0.961
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.961
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.960
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.957
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.956
MDP0000164819 Malus domestica MDP0000164819 D 0.956
Pm006885 Prunus mume Pm006885 I 0.956
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.956
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.956
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.956
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.955
Cla023054 Citrullus lanatus Cla023054 I 0.954
29929.m004704 Ricinus communis 29929.m004704 D 0.954
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.954
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.951
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.949
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.949
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.949
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.949
PK20543.1 Cannabis sativa PK20543.1 D 0.947
Bo8g107400 Brassica oleracea Bo8g107400 I 0.946
Bra026903 Brassica rapa Bra026903 I 0.946
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.944
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.941
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.941
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.941
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.940
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.940
GT-1 Arabidopsis thaliana AT1G13450 D 0.939
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.938
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.937
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.937
GT-4 Arabidopsis thaliana AT3G25990 D 0.935
Bo5g017510 Brassica oleracea Bo5g017510 I 0.929
Bra019721 Brassica rapa Bra019721 I 0.929
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.926
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.926
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.926
Pm016214 Prunus mume Pm016214 I 0.926
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.923
MDP0000275412 Malus domestica MDP0000275412 I 0.923
Bra036354 Brassica rapa Bra036354 I 0.918
Bo2g138840 Brassica oleracea Bo2g138840 I 0.918
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.915
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.911
OS04G0486400 Oryza sativa OS04G0486400 D 0.909
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.909
Si036121m.g Setaria italica Si036121m.g I 0.908
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.904
Si010147m.g Setaria italica Si010147m.g I 0.900
mgf016368m Mimulus guttatus mgf016368m I 0.898
OB04G23970 Oryza brachyantha OB04G23970 I 0.887
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.876