Gorai.011G039600 (Gossypium raimondii)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Gorai.011G039600 T250723_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.903 0.694
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.903 0.694
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.011G039600.1 MADF 44 124
Gorai.011G039600.2 MADF 44 124
Gorai.011G039600.3 MADF 44 124

Links

Other MADF family TFs
Other Gossypium raimondii TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA13G30280 Glycine max GLYMA13G30280 I 0.971
GLYMA15G08890 Glycine max GLYMA15G08890 I 0.971
Ca_00394 Cicer arietinum Ca_00394 I 0.971
TCM_029695 Theobroma cacao TCM_029695 I 0.971
POPTR_0001s08350 Populus trichocarpa POPTR_0001s08350 I 0.969
PK27986.1 Cannabis sativa PK27986.1 I 0.962
evm.TU.supercontig_7.72 Carica papaya evm.TU.supercontig_7.72 I 0.962
SapurV1A.0260s0280 Salix purpurea SapurV1A.0260s0280 I 0.960
MTR_2g016140 Medicago truncatula MTR_2g016140 I 0.959
POPTR_0003s11850 Populus trichocarpa POPTR_0003s11850 I 0.955
Ciclev10016016m.g Citrus clementina Ciclev10016016m.g I 0.955
MDP0000301451 Malus domestica MDP0000301451 I 0.955
Cla009854 Citrullus lanatus Cla009854 I 0.955
orange1.1g021525m.g Citrus sinensis orange1.1g021525m.g I 0.955
PRUPE_ppa008833mg Prunus persica PRUPE_ppa008833mg I 0.951
VIT_12s0028g02150 Vitis vinifera VIT_12s0028g02150 I 0.950
gene29666-v1.0-hybrid Fragaria vesca gene29666-v1.0-hybrid I 0.949
PGSC0003DMG400007806 Solanum tuberosum PGSC0003DMG400007806 I 0.938
SapurV1A.0045s0480 Salix purpurea SapurV1A.0045s0480 I 0.936
Solyc12g010890.1 Solanum lycopersicum Solyc12g010890.1 I 0.935
VIT_10s0003g01300 Vitis vinifera VIT_10s0003g01300 I 0.916
PRUPE_ppa009171mg Prunus persica PRUPE_ppa009171mg I 0.913
29900.m001628 Ricinus communis 29900.m001628 I 0.910
cassava2218.valid.m1 Manihot esculenta cassava2218.valid.m1 I 0.910
GSMUA_Achr6G26840_001 Musa acuminata GSMUA_Achr6G26840_001 I 0.908
AT3G58630 Arabidopsis thaliana AT3G58630 D 0.903
Thhalv10006105m.g Eutrema salsugineum Thhalv10006105m.g I 0.903
Bostr.20903s0103 Boechera stricta Bostr.20903s0103 I 0.903
cassava21220.m1 Manihot esculenta cassava21220.m1 I 0.902
fgenesh2_kg.5__2307__AT3G58630.1 Arabidopsis lyrata fgenesh2_kg.5__2307__AT3G58630.1 I 0.902
Bo6g075950 Brassica oleracea Bo6g075950 I 0.902
Bra003346 Brassica rapa Bra003346 I 0.902
LjSGA_058481.1 Lotus japonicus LjSGA_058481.1 I 0.901
Ca_19877 Cicer arietinum Ca_19877 I 0.897
evm.TU.supercontig_209.41 Carica papaya evm.TU.supercontig_209.41 I 0.895
MTR_4g079960 Medicago truncatula MTR_4g079960 I 0.895
GLYMA13G36650 Glycine max GLYMA13G36650 I 0.894
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I 0.887
Cla019967 Citrullus lanatus Cla019967 I 0.880
Cucsa.213110 Cucumis sativus Cucsa.213110 I 0.880
Cucsa.213120 Cucumis sativus Cucsa.213120 I 0.880
GSMUA_Achr9G06410_001 Musa acuminata GSMUA_Achr9G06410_001 I 0.876
Cagra.0686s0075 Capsella grandiflora Cagra.0686s0075 I 0.875
Carubv10017646m.g Capsella rubella Carubv10017646m.g I 0.875
Lus10025404.g Linum usitatissimum Lus10025404.g I 0.865
Lus10025406.g Linum usitatissimum Lus10025406.g N 0.865
Lus10015282.g Linum usitatissimum Lus10015282.g I 0.865
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I 0.862
GSMUA_Achr1G11500_001 Musa acuminata GSMUA_Achr1G11500_001 I 0.861
Bra007407 Brassica rapa Bra007407 I 0.860
GSMUA_Achr5G09160_001 Musa acuminata GSMUA_Achr5G09160_001 I 0.855
GSMUA_Achr1G27460_001 Musa acuminata GSMUA_Achr1G27460_001 I 0.853
Lus10007273.g Linum usitatissimum Lus10007273.g N 0.853
GLYMA12G33850 Glycine max GLYMA12G33850 I 0.851
mgf001239m Mimulus guttatus mgf001239m N 0.841
Cla002288 Citrullus lanatus Cla002288 I 0.840
PGSC0003DMG400020421 Solanum tuberosum PGSC0003DMG400020421 N 0.833
OBART05G25610 Oryza barthii OBART05G25610 I 0.830
BGIOSGA020351 Oryza indica BGIOSGA020351 I 0.830
ORGLA05G0221200 Oryza glaberrima ORGLA05G0221200 I 0.830
OS05G0560600 Oryza sativa OS05G0560600 I 0.830
ORUFI05G27490 Oryza rufipogon ORUFI05G27490 I 0.830
OGLUM05G27260 Oryza glumaepatula OGLUM05G27260 I 0.830
BGIOSGA020349 Oryza indica BGIOSGA020349 I 0.830
ONIVA05G26860 Oryza nivara ONIVA05G26860 I 0.830
OMERI02G35600 Oryza meridionalis OMERI02G35600 I 0.830
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.816
29814.m000741 Ricinus communis 29814.m000741 I 0.816
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.816
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.814
Sb09g028350 Sorghum bicolor Sb09g028350 I 0.813
OPUNC05G23220 Oryza punctata OPUNC05G23220 I 0.813
Si022565m.g Setaria italica Si022565m.g I 0.813
Pavir.J11649 Panicum virgatum Pavir.J11649 I 0.813
Pavir.J33948 Panicum virgatum Pavir.J33948 I 0.813
GRMZM2G157219 Zea mays GRMZM2G157219 I 0.813