Lus10036978.g (Linum usitatissimum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Lus10036978.g T250750_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.962 0.930
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.957 0.732
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.956 0.817
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.945 0.873
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.941 0.887
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.938 0.620
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.934 0.704
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.920 0.535
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.920 0.535
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.920 0.535
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.920 0.521
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.917 0.761
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.917 0.761
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.917 0.761
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.880 0.563
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.842 0.408
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10036978 MADF 79 169

Links

Other MADF family TFs
Other Linum usitatissimum TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.970
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.962
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.962
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.962
orange1.1g015940m.g Citrus sinensis orange1.1g015940m.g I 0.962
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.962
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.957
Ca_11315 Cicer arietinum Ca_11315 I 0.957
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.957
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.957
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.957
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.956
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.956
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.954
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.952
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.948
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.948
TCM_010751 Theobroma cacao TCM_010751 I 0.948
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.946
29929.m004704 Ricinus communis 29929.m004704 D 0.945
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.942
Pm006885 Prunus mume Pm006885 I 0.941
MDP0000164819 Malus domestica MDP0000164819 D 0.941
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.941
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.941
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.939
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.939
PK20543.1 Cannabis sativa PK20543.1 D 0.938
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.936
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.936
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.934
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.934
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.934
Cla023054 Citrullus lanatus Cla023054 I 0.934
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.934
Bo8g107400 Brassica oleracea Bo8g107400 I 0.929
Bra026903 Brassica rapa Bra026903 I 0.929
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.928
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.923
GT-1 Arabidopsis thaliana AT1G13450 D 0.923
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.923
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.922
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.922
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.922
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.922
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.920
GT-4 Arabidopsis thaliana AT3G25990 D 0.917
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.917
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.912
MDP0000275412 Malus domestica MDP0000275412 I 0.909
Bra019721 Brassica rapa Bra019721 I 0.907
Bo5g017510 Brassica oleracea Bo5g017510 I 0.907
Pm016214 Prunus mume Pm016214 I 0.905
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.905
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.902
Bo2g138840 Brassica oleracea Bo2g138840 I 0.896
Bra036354 Brassica rapa Bra036354 I 0.896
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.895
mgf016368m Mimulus guttatus mgf016368m I 0.891
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.890
OS04G0486400 Oryza sativa OS04G0486400 D 0.880
Si010147m.g Setaria italica Si010147m.g I 0.880
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.880
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.880
Si036121m.g Setaria italica Si036121m.g I 0.878
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.875
OB04G23970 Oryza brachyantha OB04G23970 I 0.864
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.842