CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000164819
(
Malus domestica
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
MDP0000164819
T250758_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN
NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN
NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.968
0.795
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC
GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.961
0.575
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM
KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.956
0.575
GT-1
M10896_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.956
0.575
GT-1
M10897_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.956
0.575
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN
NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.956
0.959
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.954
0.808
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.954
0.808
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.954
0.808
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN
NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.950
0.767
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.943
0.836
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.934
0.603
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN
NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.930
0.890
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.919
0.644
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV
BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.866
0.411
For this family, TFs with SR scores >
0.812
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02280_2.00
MADF
51
136
LIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNPQH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000164819
MADF
77
162
LIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNPQH
Links
Other
MADF
family TFs
Other
Malus domestica
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pm006885
Prunus mume
Pm006885
I
0.971
LjT04G17.70.nc
Lotus japonicus
LjT04G17.70.nc
I
0.968
MTR_3g085960
Medicago truncatula
MTR_3g085960
D
0.968
Cla023054
Citrullus lanatus
Cla023054
I
0.968
Bra026903
Brassica rapa
Bra026903
I
0.965
Cucsa.394820
Cucumis sativus
Cucsa.394820
I
0.964
Carubv10009313m.g
Capsella rubella
Carubv10009313m.g
I
0.962
Thhalv10007959m.g
Eutrema salsugineum
Thhalv10007959m.g
I
0.962
Cagra.3501s0157
Capsella grandiflora
Cagra.3501s0157
I
0.962
GT-1
Arabidopsis lyrata
scaffold_101505.1
D
0.961
Bostr.13671s0104
Boechera stricta
Bostr.13671s0104
I
0.959
GT-1
Arabidopsis thaliana
AT1G13450
D
0.958
PRUPE_ppa009404mg
Prunus persica
PRUPE_ppa009404mg
I
0.956
cassava13991.valid.m1
Manihot esculenta
cassava13991.valid.m1
D
0.956
Gorai.008G163200
Gossypium raimondii
Gorai.008G163200
I
0.956
POPTR_0010s06510
Populus trichocarpa
POPTR_0010s06510
I
0.956
cassava11841.valid.m1
Manihot esculenta
cassava11841.valid.m1
I
0.956
AMTR_s00005p00185670
Amborella trichopoda
AMTR_s00005p00185670
I
0.955
Bra019721
Brassica rapa
Bra019721
I
0.954
GT-4
Arabidopsis thaliana
AT3G25990
D
0.954
Bo5g017510
Brassica oleracea
Bo5g017510
I
0.954
GLYMA18G01360
Glycine max
GLYMA18G01360
I
0.950
Ca_11315
Cicer arietinum
Ca_11315
I
0.950
GLYMA11G37390
Glycine max
GLYMA11G37390
D
0.950
evm.TU.supercontig_130.35
Carica papaya
evm.TU.supercontig_130.35
I
0.950
VIT_01s0010g02420
Vitis vinifera
VIT_01s0010g02420
I
0.950
Ciclev10031750m.g
Citrus clementina
Ciclev10031750m.g
I
0.950
orange1.1g015940m.g
Citrus sinensis
orange1.1g015940m.g
I
0.950
PDK_20s1345831g002
Phoenix dactylifera
PDK_20s1345831g002
I
0.950
SapurV1A.1719s0020
Salix purpurea
SapurV1A.1719s0020
I
0.947
Bo8g107400
Brassica oleracea
Bo8g107400
I
0.946
Aquca_011_00297
Aquilegia coerulea
Aquca_011_00297
I
0.945
evm.TU.supercontig_1453.1
Carica papaya
evm.TU.supercontig_1453.1
I
0.945
Lus10015824.g
Linum usitatissimum
Lus10015824.g
I
0.944
Eucgr.B03456
Eucalyptus grandis
Eucgr.B03456
I
0.943
fgenesh2_kg.5__353__AT3G25990.1
Arabidopsis lyrata
fgenesh2_kg.5__353__AT3G25990.1
D
0.943
Lus10036978.g
Linum usitatissimum
Lus10036978.g
I
0.941
Gorai.009G333800
Gossypium raimondii
Gorai.009G333800
I
0.940
TCM_010751
Theobroma cacao
TCM_010751
I
0.940
VIT_14s0171g00450
Vitis vinifera
VIT_14s0171g00450
I
0.938
MLOC_64014
Hordeum vulgare
MLOC_64014
I
0.937
POPTR_0008s17980
Populus trichocarpa
POPTR_0008s17980
I
0.934
GRMZM2G047370
Zea mays
GRMZM2G047370
I
0.934
OS04G0486400
Oryza sativa
OS04G0486400
D
0.934
Si036121m.g
Setaria italica
Si036121m.g
I
0.933
29929.m004704
Ricinus communis
29929.m004704
D
0.930
Si010147m.g
Setaria italica
Si010147m.g
I
0.927
SapurV1A.0206s0170
Salix purpurea
SapurV1A.0206s0170
I
0.926
GSMUA_Achr3G19370_001
Musa acuminata
GSMUA_Achr3G19370_001
I
0.924
Aquca_123_00031
Aquilegia coerulea
Aquca_123_00031
I
0.923
GSMUA_Achr5G17240_001
Musa acuminata
GSMUA_Achr5G17240_001
I
0.920
PK20543.1
Cannabis sativa
PK20543.1
D
0.919
Eucgr.J02286
Eucalyptus grandis
Eucgr.J02286
I
0.919
OB04G23970
Oryza brachyantha
OB04G23970
I
0.917
AMTR_s00055p00209070
Amborella trichopoda
AMTR_s00055p00209070
I
0.917
Thhalv10004359m.g
Eutrema salsugineum
Thhalv10004359m.g
I
0.916
Bostr.0556s0275
Boechera stricta
Bostr.0556s0275
I
0.915
Bra036354
Brassica rapa
Bra036354
I
0.911
Bo2g138840
Brassica oleracea
Bo2g138840
I
0.911
Solyc12g077540.1
Solanum lycopersicum
Solyc12g077540.1
I
0.907
Cagra.6197s0012
Capsella grandiflora
Cagra.6197s0012
I
0.900
Pavir.Ga01561
Panicum virgatum
Pavir.Ga01561
I
0.900
Carubv10017413m.g
Capsella rubella
Carubv10017413m.g
I
0.900
mgf016368m
Mimulus guttatus
mgf016368m
I
0.898
Pm016214
Prunus mume
Pm016214
I
0.888
PRUPE_ppa005942mg
Prunus persica
PRUPE_ppa005942mg
I
0.888
MDP0000275412
Malus domestica
MDP0000275412
I
0.883
VIT_17s0000g10420
Vitis vinifera
VIT_17s0000g10420
D
0.866