CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000164819
(
Malus domestica
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
MDP0000164819
T250758_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MDP0000164819
M02280_2.00
Malus domestica
YTAACYVNNN
NNNBRGTTAR
PBM
Weirauch et al.(2014)
pTH9204
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MTR_3g085960
M02270_2.00
Medicago truncatula
NWAACYNNNN
NNNNRGTTWN
PBM
Weirauch et al.(2014)
pTH9208
0.968
0.795
GT-1
M02274_2.00
Arabidopsis lyrata
GGTTAACC
GGTTAACC
PBM
Weirauch et al.(2014)
pTH9235
0.961
0.575
GT-1
M02263_2.00
Arabidopsis thaliana
KTTAACCM
KGGTTAAM
PBM
Weirauch et al.(2014)
pTH8149
0.956
0.575
GT-1
M10896_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6_02
0.956
0.575
GT-1
M10897_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GT1_Q6
0.956
0.575
cassava13991.valid.m1
M02279_2.00
Manihot esculenta
NNDACHNNNN
NNNNDGTHNN
PBM
Weirauch et al.(2014)
pTH9206
0.956
0.959
GT-4
M02265_2.00
Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN
PBM
Weirauch et al.(2014)
pTH7910
0.954
0.808
GT-4
M06974_2.00
Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT
Dap-seq
OMalley et al.(2016)
AT3G25990_col_a
0.954
0.808
GT-4
M06975_2.00
Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW
Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a
0.954
0.808
GLYMA11G37390
M02269_2.00
Glycine max
BWDACYNNNN
NNNNRGTHWV
PBM
Weirauch et al.(2014)
pTH9183
0.950
0.767
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00
Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN
PBM
Weirauch et al.(2014)
pTH9228
0.943
0.836
OS04G0486400
M02273_2.00
Oryza sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Weirauch et al.(2014)
pTH9338
0.934
0.603
29929.m004704
M02278_2.00
Ricinus communis
NDNDHDHNHN
NDNDHDHNHN
PBM
Weirauch et al.(2014)
pTH9339
0.930
0.890
PK20543.1
M01264_2.00
Cannabis sativa
YTAACYNNNN
NNNNRGTTAR
PBM
Lambert et al.(2019)
pTH11253
0.919
0.644
VIT_17s0000g10420
M02275_2.00
Vitis vinifera
GTTAACYV
BRGTTAAC
PBM
Weirauch et al.(2014)
pTH9293
0.866
0.411
For this family, TFs with SR scores >
0.812
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M02280_2.00
MADF
51
136
LIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNPQH
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000164819
MADF
77
162
LIALRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKNPQH
Links
Other
MADF
family TFs
Other
Malus domestica
TFs
68 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy