orange1.1g003766m.g (Citrus sinensis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 orange1.1g003766m.g T250789_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT-GTL1
M06968_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_col_a
0.842 0.795
AT-GTL1
M06969_2.00
Arabidopsis thaliana
RHRGTAAAWW

WWTTTACYDY
Dap-seq
OMalley et al.(2016)
GTL1_colamp_a
0.919 0.810
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g003766m MADF 105 176
orange1.1g003766m MADF 540 610
orange1.1g005124m MADF 105 176
orange1.1g005124m MADF 540 610
orange1.1g005262m MADF 105 176
orange1.1g005262m MADF 540 610
orange1.1g005787m MADF 9 57
orange1.1g005787m MADF 421 491

Links

Other MADF family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action