orange1.1g015940m.g (Citrus sinensis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 orange1.1g015940m.g T250795_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
cassava13991.valid.m1
M02279_2.00 		Manihot esculenta
NNDACHNNNN
NNNNDGTHNN		 PBM
Weirauch et al.(2014)
pTH9206 		0.967 0.973
GLYMA11G37390
M02269_2.00 		Glycine max
BWDACYNNNN
NNNNRGTHWV		 PBM
Weirauch et al.(2014)
pTH9183 		0.963 0.753
fgenesh2_kg.5__353__AT3G25990.1
M02268_2.00 		Arabidopsis lyrata
NNNHAACCCCYNN
NNRGGGGTTDNNN		 PBM
Weirauch et al.(2014)
pTH9228 		0.958 0.808
MDP0000164819
M02280_2.00 		Malus domestica
YTAACYVNNN
NNNBRGTTAR		 PBM
Weirauch et al.(2014)
pTH9204 		0.950 0.932
29929.m004704
M02278_2.00 		Ricinus communis
NDNDHDHNHN
NDNDHDHNHN		 PBM
Weirauch et al.(2014)
pTH9339 		0.948 0.904
MTR_3g085960
M02270_2.00 		Medicago truncatula
NWAACYNNNN
NNNNRGTTWN		 PBM
Weirauch et al.(2014)
pTH9208 		0.943 0.740
PK20543.1
M01264_2.00 		Cannabis sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Lambert et al.(2019)
pTH11253 		0.940 0.630
GT-1
M02274_2.00 		Arabidopsis lyrata
GGTTAACC
GGTTAACC		 PBM
Weirauch et al.(2014)
pTH9235 		0.931 0.548
GT-1
M02263_2.00 		Arabidopsis thaliana
KTTAACCM
KGGTTAAM		 PBM
Weirauch et al.(2014)
pTH8149 		0.924 0.548
GT-1
M10896_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6_02 		0.924 0.548
GT-1
M10897_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GT1_Q6 		0.924 0.548
GT-4
M02265_2.00 		Arabidopsis thaliana
NHDACHNNNN
NNNNDGTHDN		 PBM
Weirauch et al.(2014)
pTH7910 		0.920 0.753
GT-4
M06974_2.00 		Arabidopsis thaliana
AACCATGGTTAADWYWWWWHH
DDWWWWRWHTTAACCATGGTT		 Dap-seq
OMalley et al.(2016)
AT3G25990_col_a 		0.920 0.753
GT-4
M06975_2.00 		Arabidopsis thaliana
WWMNYTAACYVWRRTTADNH
DNHTAAYYWBRGTTARNKWW		 Dap-seq
OMalley et al.(2016)
AT3G25990_colamp_a 		0.920 0.753
OS04G0486400
M02273_2.00 		Oryza sativa
YTAACYNNNN
NNNNRGTTAR		 PBM
Weirauch et al.(2014)
pTH9338 		0.887 0.575
VIT_17s0000g10420
M02275_2.00 		Vitis vinifera
GTTAACYV
BRGTTAAC		 PBM
Weirauch et al.(2014)
pTH9293 		0.850 0.397
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g015940m MADF 89 175
orange1.1g016093m MADF 89 175
orange1.1g016782m MADF 89 175
orange1.1g019686m MADF 89 176

Links

Other MADF family TFs
Other Citrus sinensis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10031750m.g Citrus clementina Ciclev10031750m.g I 0.971
cassava11841.valid.m1 Manihot esculenta cassava11841.valid.m1 I 0.967
Gorai.008G163200 Gossypium raimondii Gorai.008G163200 I 0.967
cassava13991.valid.m1 Manihot esculenta cassava13991.valid.m1 D 0.967
GLYMA18G01360 Glycine max GLYMA18G01360 I 0.963
GLYMA11G37390 Glycine max GLYMA11G37390 D 0.963
Ca_11315 Cicer arietinum Ca_11315 I 0.963
VIT_01s0010g02420 Vitis vinifera VIT_01s0010g02420 I 0.963
Lus10015824.g Linum usitatissimum Lus10015824.g I 0.963
Lus10036978.g Linum usitatissimum Lus10036978.g I 0.962
SapurV1A.1719s0020 Salix purpurea SapurV1A.1719s0020 I 0.961
Aquca_011_00297 Aquilegia coerulea Aquca_011_00297 I 0.960
evm.TU.supercontig_1453.1 Carica papaya evm.TU.supercontig_1453.1 I 0.959
fgenesh2_kg.5__353__AT3G25990.1 Arabidopsis lyrata fgenesh2_kg.5__353__AT3G25990.1 D 0.958
Eucgr.B03456 Eucalyptus grandis Eucgr.B03456 I 0.958
TCM_010751 Theobroma cacao TCM_010751 I 0.956
Gorai.009G333800 Gossypium raimondii Gorai.009G333800 I 0.956
VIT_14s0171g00450 Vitis vinifera VIT_14s0171g00450 I 0.954
POPTR_0008s17980 Populus trichocarpa POPTR_0008s17980 I 0.951
MDP0000164819 Malus domestica MDP0000164819 D 0.950
Pm006885 Prunus mume Pm006885 I 0.950
POPTR_0010s06510 Populus trichocarpa POPTR_0010s06510 I 0.950
29929.m004704 Ricinus communis 29929.m004704 D 0.948
SapurV1A.0206s0170 Salix purpurea SapurV1A.0206s0170 I 0.945
GSMUA_Achr3G19370_001 Musa acuminata GSMUA_Achr3G19370_001 I 0.944
Cla023054 Citrullus lanatus Cla023054 I 0.943
Aquca_123_00031 Aquilegia coerulea Aquca_123_00031 I 0.943
MTR_3g085960 Medicago truncatula MTR_3g085960 D 0.943
LjT04G17.70.nc Lotus japonicus LjT04G17.70.nc I 0.943
GSMUA_Achr5G17240_001 Musa acuminata GSMUA_Achr5G17240_001 I 0.941
PK20543.1 Cannabis sativa PK20543.1 D 0.940
Bo8g107400 Brassica oleracea Bo8g107400 I 0.939
Bra026903 Brassica rapa Bra026903 I 0.939
Thhalv10004359m.g Eutrema salsugineum Thhalv10004359m.g I 0.938
AMTR_s00055p00209070 Amborella trichopoda AMTR_s00055p00209070 I 0.938
Cucsa.394820 Cucumis sativus Cucsa.394820 I 0.937
Bostr.0556s0275 Boechera stricta Bostr.0556s0275 I 0.937
Thhalv10007959m.g Eutrema salsugineum Thhalv10007959m.g I 0.934
Carubv10009313m.g Capsella rubella Carubv10009313m.g I 0.933
Cagra.3501s0157 Capsella grandiflora Cagra.3501s0157 I 0.933
AMTR_s00005p00185670 Amborella trichopoda AMTR_s00005p00185670 I 0.932
GT-1 Arabidopsis lyrata scaffold_101505.1 D 0.931
Bostr.13671s0104 Boechera stricta Bostr.13671s0104 I 0.929
GT-1 Arabidopsis thaliana AT1G13450 D 0.927
Carubv10017413m.g Capsella rubella Carubv10017413m.g I 0.926
Cagra.6197s0012 Capsella grandiflora Cagra.6197s0012 I 0.926
PRUPE_ppa009404mg Prunus persica PRUPE_ppa009404mg I 0.924
PDK_20s1345831g002 Phoenix dactylifera PDK_20s1345831g002 I 0.923
GT-4 Arabidopsis thaliana AT3G25990 D 0.920
Bo5g017510 Brassica oleracea Bo5g017510 I 0.920
Bra019721 Brassica rapa Bra019721 I 0.920
PRUPE_ppa005942mg Prunus persica PRUPE_ppa005942mg I 0.916
Pm016214 Prunus mume Pm016214 I 0.916
evm.TU.supercontig_130.35 Carica papaya evm.TU.supercontig_130.35 I 0.914
MDP0000275412 Malus domestica MDP0000275412 I 0.913
Eucgr.J02286 Eucalyptus grandis Eucgr.J02286 I 0.908
Bo2g138840 Brassica oleracea Bo2g138840 I 0.900
Bra036354 Brassica rapa Bra036354 I 0.900
Solyc12g077540.1 Solanum lycopersicum Solyc12g077540.1 I 0.895
MLOC_64014 Hordeum vulgare MLOC_64014 I 0.892
OS04G0486400 Oryza sativa OS04G0486400 D 0.887
GRMZM2G047370 Zea mays GRMZM2G047370 I 0.887
Pavir.Ga01561 Panicum virgatum Pavir.Ga01561 I 0.887
Si036121m.g Setaria italica Si036121m.g I 0.886
mgf016368m Mimulus guttatus mgf016368m I 0.885
Si010147m.g Setaria italica Si010147m.g I 0.876
OB04G23970 Oryza brachyantha OB04G23970 I 0.860
VIT_17s0000g10420 Vitis vinifera VIT_17s0000g10420 D 0.850